Pairwise Alignments

Query, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  153 bits (386), Expect = 9e-42
 Identities = 102/346 (29%), Positives = 165/346 (47%), Gaps = 3/346 (0%)

Query: 11  LFAAMVLAGVAGHSFAAD-TIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKGGVDGK 69
           L  A  LAG AG +FA   T +IG     TGP    G+     A+ A+  IN  GGV+GK
Sbjct: 14  LACAAGLAGFAGGAFAQGATTRIGFQAGLTGPAAADGNAGLAAARLAVEQINGAGGVNGK 73

Query: 70  MLEAKEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAAT 129
            LE   YDD   P+QAV +AN++V DGV+ VV    S  ++ A+ +++   +  I   A 
Sbjct: 74  KLELVVYDDQGKPEQAVPIANRMVGDGVRAVVSAGFSGPSRAAAPVFQRAKIPYIAAIAF 133

Query: 130 SPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAVKQTL 189
           +PEIT  G   +FR   +   QG AA   + D +  K   +L  K  +G+ +A   K+  
Sbjct: 134 APEITRTG-NYMFRVTSVGEVQGRAAAKLMGDVLHKKRAVLLTIKTDFGKTLAAGFKEAA 192

Query: 190 EKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKEKGLNAKF 249
            K G ++         D+ F  +I  +K  N D +Y  G++   G ++ Q +  G+ A  
Sbjct: 193 PKFGVQLLKEYEYAPSDRQFGPLIASIKADNPDVIYATGFYFTAGPLVAQLRSAGVTADV 252

Query: 250 MGPEGVGNDSISQIAQGASEGLLVTLPKSFDTD-PANKAIVEEFAKNKQDPTGPFVFPAY 308
           +G E + +     IA  A+EG ++T    + +  P     ++ + K             +
Sbjct: 253 VGAESLSSQQYIDIAGQAAEGTVITNVIDWGSQLPEIADFLKAYEKATNSKAEAAATSTH 312

Query: 309 SAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTPTGDLSFDAKGDLK 354
           +A+  +A  I+ AKS+D  K+  A+      T  G +SF+   ++K
Sbjct: 313 AAVVALAAAIRKAKSDDPDKIRAALETLDVTTAIGRISFNKLHEVK 358