Pairwise Alignments

Query, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

 Score =  206 bits (523), Expect = 1e-57
 Identities = 126/360 (35%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 26  AADT--IKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKG---GVDGKMLEAKEYDDAC 80
           A DT  +KIG   P +GP+   G    MGAK AI D+NAKG   G      E    DDA 
Sbjct: 47  AGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAKFELVAEDDAG 106

Query: 81  DPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAATSPEITARGYKL 140
           DPKQ  AVA K+V++ V  VVGHL S +T PAS +Y D G+  I+P+AT+P+ T +G+K 
Sbjct: 107 DPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATNPKYTRQGFKT 166

Query: 141 IFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAVKQTLEKKGTKVAVFE 200
            FR +  D+  G   G Y  + +K K +AV+ D+  YG+G+A   +++ +  G  +   E
Sbjct: 167 TFRVVADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSAKAAGATIVGHE 226

Query: 201 GLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKEKGLNAKFMGPEGVGNDSI 260
                  DF++I+ KLK A  D +++GG     G +L+Q K+ GLN KFMG +G+    +
Sbjct: 227 FTTDKSTDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVKFMGGDGLCTGEL 286

Query: 261 SQIAQGASEGLLVTLPKSFDTDPANKAIVEEFAKNKQDPTG-------PFVFPAYSAIEV 313
            ++A  A    +V   ++   D   K  +E+F    +   G       P+V   Y A+ V
Sbjct: 287 PKLAGDAIGEDMVVCAEAGGVDGDFKQPLEDFKAKFKTKNGVEVQIYAPYV---YDAVNV 343

Query: 314 IAGGIKAAKSEDTAKVAEAIHAGTFKTPTGDLSFDAKGDLKDFKFVVYEWHFGKPKTEVS 373
           +A  +  A S D  K    +    +K  TG ++FD KGD+K+    +Y +  G  +T+++
Sbjct: 344 LAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIKNGALTLYTYK-GGARTQIA 402