Pairwise Alignments

Query, 307 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  339 bits (870), Expect = 4e-98
 Identities = 171/301 (56%), Positives = 223/301 (74%), Gaps = 1/301 (0%)

Query: 7   FFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIALAGLAMMGIH 66
           F QQLVNGLT+GS Y LIAIGYTMVYGIIGMINFAHGEVYMI +Y+A I+LA LA  G+ 
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64

Query: 67  SLPLLMTAAFLASIVVTSAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNTVLLSQD 126
           S PLLM    L +IVVT  YG++IER+AY+PLR S RL PLISAIG+S+ LQN   +SQ 
Sbjct: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124

Query: 127 SKDKSIPNLIPGSFSFGPGGAEEVLISYMQILVFVVTLVAMLGLTLFISRSRLGRACRAC 186
           ++ + +P L+ G+     G    V ++Y +I + V   V M  LT  I  ++LGR CRA 
Sbjct: 125 ARQQGVPTLLEGAMRVEVGSGF-VQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRAT 183

Query: 187 AEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFTAAV 246
            +D KMA++LGINT+ +I+  FVIGA +AA+A VL++M YG  +  AGF++G+KAFTAAV
Sbjct: 184 QQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAV 243

Query: 247 LGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVEK 306
           LGGIGS+PGAMLGG++LG++E+  + +    YKDV +F LLV++L+FRP G+LGRP V K
Sbjct: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLVAK 303

Query: 307 V 307
           V
Sbjct: 304 V 304