Pairwise Alignments

Query, 259 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 260 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  223 bits (567), Expect = 4e-63
 Identities = 122/259 (47%), Positives = 158/259 (61%), Gaps = 4/259 (1%)

Query: 1   MKKALLTLSALALCMAAGSTLAKEYKELRFGVDPSYAPFESKAADGSLVGFDIDLGNAIC 60
           MKK +L LS L    AA  + A   + +R G D +YAPF SK A G  VGFDIDLGN +C
Sbjct: 1   MKKTVLALSLLVGLSAAAGSYAALPQTVRIGTDATYAPFSSKDAKGDFVGFDIDLGNEMC 60

Query: 61  AELKVKCKWVESDFDGMIPGLKANKFDGVISSMTVTPVREKAIDFSSELFSGPTSLVFKK 120
             + VKC WV SDFD +IP LKA K D +ISS+++T  R++ I FS +L++  + L+  K
Sbjct: 61  KRIAVKCTWVGSDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADSRLIAPK 120

Query: 121 GAGYS-TPESLKGKSVGYEQGTIQEAYAKAVLDKAGVTTKAYANQDQVYADLTSGRLDAS 179
           G+    T +SLKGK VG  QG+ QE YA A   + GV   AY NQD +Y+DL +GRLDA+
Sbjct: 121 GSPIKPTIDSLKGKHVGVLQGSTQEGYANATWREKGVDVVAYQNQDLIYSDLAAGRLDAA 180

Query: 180 VQDMLQAELGFLKSPAGAGYEVS--AAIDDPLLPSKTAIGIKKGNTELKTLLDKGIKALH 237
            QD + A  GFLK PAG  Y  +  +  D       T IG++K +TELK   DK    L 
Sbjct: 181 FQDEVAASEGFLKQPAGKDYAFAGPSVKDKKYFGDGTGIGLRKDDTELKAAFDKAFAELR 240

Query: 238 DDGTYATIQKKHFGDLNLY 256
            DGTY  + KK+F D N+Y
Sbjct: 241 KDGTYDKLAKKYF-DFNVY 258