Pairwise Alignments

Query, 236 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 226 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  110 bits (275), Expect = 2e-29
 Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 16/210 (7%)

Query: 5   LQEYWRPFLYSDGQHITGLAMTMWLLTTALVIGFLVSIPLSIARVSRKRLVRWPVQFYTY 64
           L  +  PFL      + G+ +T+ L    + IG  +++PL++  +S  R +  P +FY +
Sbjct: 8   LSYFVNPFL------LGGVGITIGLTIATIAIGLALALPLALGSMSSHRFLSAPARFYIW 61

Query: 65  LFRGTPLYIQLLICYTGIYSLAAVREQPLLDAFFRDAMNCTILAFALNTCAYTTEIFAGA 124
           +FRGTPL +Q++I YTG+         P L   F D +   +LA +LN  AY +E   G 
Sbjct: 62  VFRGTPLLVQIVIIYTGL---------PQLGLRF-DVLTSAVLALSLNEAAYLSETIRGG 111

Query: 125 IRSMAHGEVEAAKAYGLSGWKLYAYVIMPSALRRSLPYYSNEVILMLHSTTVAFTATIPD 184
             ++A G+VEAAKA  LS +     V +P  LR  +P   N V  +L +T++A   ++ +
Sbjct: 112 FSAIAKGQVEAAKALSLSRFATLRLVTLPQVLRVIIPPLGNSVNGLLKATSLASVISMEE 171

Query: 185 ILKVARDANSATFMTFQSFGIAALIYLTVT 214
           +++ A+      F   + + +AA  YL +T
Sbjct: 172 LMRRAQVLMQEKFEVLELYCVAACFYLVLT 201