Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

 Score =  234 bits (598), Expect = 2e-65
 Identities = 249/874 (28%), Positives = 371/874 (42%), Gaps = 87/874 (9%)

Query: 10  RWFAAKGWKPFAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKR 69
           RWF      P + Q E W A+++G+  L+ A TG+GKT   + AAL+        V    
Sbjct: 12  RWFLRTFPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDEL------VRRGL 65

Query: 70  KPPAEP--LTVLWITPMRALAADTARALEAPLEALQ----------IPWSVGLRTGDTSS 117
           +P   P    V++++P++AL+ D    L+APL  ++          +     +RTGDT  
Sbjct: 66  EPGGLPDETAVVYVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTGDTPQ 125

Query: 118 SERARQTRRQPTVLVTTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLA 177
            ER +  RR P VLVTTPESL ++L        L  +R V+VDE H +  +KRG  L L+
Sbjct: 126 RERQQSLRRPPHVLVTTPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSHLALS 185

Query: 178 LARLRRW---HPDL--MVWGISATLGNQAHALEVLVPQG--------DGINVQGQTAKQL 224
           L RL+     H  +  +  G+SAT          LV  G        D   V    AKQ 
Sbjct: 186 LERLQARCLAHSGVRPVRIGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIGYAKQR 245

Query: 225 IIDTLLPPVTERFPWAGHIGLKMLPQVVAEVDASSSCLVFTNTRAQSEIWFQALLDARPD 284
            +   LPP       +G    ++  +V   V    + LVF NTR  +E   + L D    
Sbjct: 246 DLALELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLGDILGK 305

Query: 285 WAGVIALHHGSLSRETRDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVA 344
            A  +A HHGSLS+ETR   E+ LK G LK +V T+SL+LG+D   V+ V QIGS + +A
Sbjct: 306 EA--VAAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPRAIA 363

Query: 345 RLMQRAGRSGHAPGRPSRVTLVPTHSLELVEAAAAQDAIAQRRIEARESPYKPLDVLVQH 404
             +QRAGRSGHA G   +  L P    ELVE AA  D I +  ++A      PLDVL Q 
Sbjct: 364 TFLQRAGRSGHAVGGVPKARLFPQSRDELVECAALLDCIRRGELDALRILPAPLDVLAQQ 423

Query: 405 LVSMALGGGYKPDDLLVEVRGAWAYHDLTDEDWAWALGFVRHGGLSLTAYPDYRRV---- 460
           +V+      +  ++L   VR AW Y  LT + +   +  V  G     A P  +R     
Sbjct: 424 IVAETACREWNEEELFTLVRRAWPYAQLTRKSYMDVVRMVSEG----FATPQGQRAGHVH 479

Query: 461 -EPDEHGIWRVPDARLARRHRMSVGTI--VSDASIHLKFWSKGGGGKNLGSVEEGFIARL 517
            +   H +     AR+      S GTI    D ++ L+          +G+V E F    
Sbjct: 480 RDAVNHLLRERKGARMTA--LTSGGTIPETGDYTVVLE-----PQADKIGTVNEDFAIES 532

Query: 518 KPGDGFLFAGRLLELVRVENMTAYVRRSNAKKAAVPRWNGGRMPLSNELAQAVVERFDAA 577
             GD F        ++++E     V  ++     +P W G     S+EL+  V       
Sbjct: 533 LAGDVFQLGNTSYRILKIEPGRVRVEDAHGVAPNIPFWLGEAPGRSDELSHGVSRLRAEV 592

Query: 578 AQGHFEGPEMQAVRPLLQT------------------QVRWSGLPTREHLLAEA-LKSRE 618
           AQ    G    A+R L QT                        LPT+  L+ E    +  
Sbjct: 593 AQALEAGGRDAAMRLLTQTFGLDEEAARQIVEHLAHAHAVLGTLPTQRTLILERFFDASG 652

Query: 619 GWHLFLYPFAGRQVHLGLASLLAWRVSQGQAVTFSIAVNDYGLELLSATEVNWPALLNEA 678
           G  L ++   G +++      L  R  +        A  +  + L  +T  ++P      
Sbjct: 653 GMQLVIHSPFGSRLNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFPLDEVAR 712

Query: 679 LLSPEHLLEDVVASLNAGELALRRFREIARIAGLVFAGYPGAPKSTRQVQ--ASSGLFFE 736
            L     L  +V +L    L   R+R  A  A L    + G  K   Q+Q   S  L   
Sbjct: 713 YLHSSSALHVLVQALLDAPLFNVRWRWNATTA-LALPRFSGGRKVAPQLQRMRSEDLLAA 771

Query: 737 VF------------KQYDPQNLLLTQAGEEVLRDELDIRRLEQTLRHLCA--LKLELHRI 782
           VF            ++  P++ L+ Q  ++ L D +D       LR + +  +++    +
Sbjct: 772 VFPDQVACAENIVGERDVPEHPLVAQTLDDCLHDAMDADGWLSLLRRMESGEVRVIARDL 831

Query: 783 QRPTPLAFPLLVERMRESMSSEKLSERIARMVKD 816
             P+PLA   L  R    +    L ER  + V++
Sbjct: 832 PAPSPLAMEALSARPYAFLDDAPLEERRTQAVQN 865