Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

 Score =  221 bits (564), Expect = 2e-61
 Identities = 238/858 (27%), Positives = 367/858 (42%), Gaps = 93/858 (10%)

Query: 23  QKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKRKPPAEPLTVLWIT 82
           Q + W  + +GQS LL A TG+GKT + + A L+   + R  +  + + PA+ L V++++
Sbjct: 33  QAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDE--LLREGMKHQGELPAQTL-VIYVS 89

Query: 83  PMRALAADTARALEAPLEA---------LQIPW-SVGLRTGDTSSSERARQTRRQPTVLV 132
           P++AL+ D    L+APLE          L  P  +  +RTGDT   ERA   +  P +LV
Sbjct: 90  PLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILV 149

Query: 133 TTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALARLRRW-HPDLMVW 191
           TTPESL +++  A     LAH+  V+VDE H L GNKRG  L L L RL+      L   
Sbjct: 150 TTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRI 209

Query: 192 GISATLGNQAHALEVLVPQGDG---INVQGQTAKQLIIDTLLPPVTERFPWAGHIGLKML 248
           G+SAT        + LV  G     +++     + L I+  +PPV      A  +   + 
Sbjct: 210 GLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIE--VPPVPLGAVMAIDVWGLVY 267

Query: 249 PQVVAEVDASSSCLVFTNTRAQSEIWFQALLDARPDWAGVIALHHGSLSRETRDWVERAL 308
            ++        + LVF NTR  +E   + L D     A  +A HHGSLS+  R   E+ L
Sbjct: 268 DRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEA--VAAHHGSLSKALRLDAEQRL 325

Query: 309 KDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRPSRVTLVPT 368
           K GQL+ +V T+SL+LG+D   ++ V Q+ S   +A  +QR GR+GH      +  L PT
Sbjct: 326 KSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKGRLFPT 385

Query: 369 HSLELVEAAAAQDAIAQRRIEARESPYKPLDVLVQHLVSMALGGGYKPDDLLVEVRGAWA 428
              +L+E  A  D + Q  ++A   P  PLDVL Q +V+ A    +   +LL  +R A  
Sbjct: 386 SRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELLDCLRQATP 445

Query: 429 YHDLTDEDWAWALGFVRHGGLSLTAYPDYRRVEPDEHGIWRVPDARLARRHRMSV-GTIV 487
           Y +L    +   L  +  G      Y   + V             R A  HR +V GT+ 
Sbjct: 446 YAELDQHHYQALLRMLAEG------YNGRQGV-------------RSAYLHRDAVSGTLR 486

Query: 488 SDASIHLKFWSKGG--------------GGKNLGSVEEGFIARLKPGDGFLFAGRLLELV 533
                 L   + GG                 N+GSV E F      GD F        ++
Sbjct: 487 GRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRIL 546

Query: 534 RVENMTAYVRRSNAKKAAVPRWNGGRMPLSNELAQAVVE---RFD--------------A 576
           RVE     V  ++     +P W G     S+EL+ AV     R D              A
Sbjct: 547 RVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLA 606

Query: 577 AAQGHFEGPEM---QAVRPLLQTQVRWSGLPTREHLLAEALKSRE-GWHLFLYPFAGRQV 632
             Q  FE  E    Q +  L +T+     LP+++ L+ E       G  L ++   G ++
Sbjct: 607 WLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRI 666

Query: 633 HLGLASLLAWRVSQGQAVTFSIAVNDYGLELLSATEVNWPALLNEALLSPEHLLEDVVAS 692
           +      L  R  +        A ++  + L  +T  ++        L+       ++ +
Sbjct: 667 NRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPILIQA 726

Query: 693 LNAGELALRRFREIARIAGLVFAGYPGAPKSTRQVQ--ASSGLFFEVF------------ 738
           L    L   R+R  A +A +    + G  K   Q+Q   S  L   VF            
Sbjct: 727 LLDAPLFGVRWRWNAGVA-MALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLENIAG 785

Query: 739 KQYDPQNLLLTQAGEEVLRDELDIRRLEQTLRHL--CALKLELHRIQRPTPLAFPLLVER 796
           ++  P + L+ Q  ++ L + +D       LR +   A++L    +  P+PLA  +L  R
Sbjct: 786 ERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAILNAR 845

Query: 797 MRESMSSEKLSERIARMV 814
               +    L ER  + V
Sbjct: 846 PYAFLDDAPLEERRTQAV 863