Pairwise Alignments

Query, 826 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 1538 a.a., putative ATP-dependent helicase from Escherichia coli BL21

 Score =  234 bits (597), Expect = 3e-65
 Identities = 237/882 (26%), Positives = 382/882 (43%), Gaps = 87/882 (9%)

Query: 11  WFAAKGWKPFAFQKEVWAAVKSGQSGLLHASTGAGKTYALWFAALNRFAIARPPVTAKRK 70
           WF     +P A Q + W      +  L+ A TG+GKT A +  AL+R          +  
Sbjct: 22  WFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRL-FREGGEDTREA 80

Query: 71  PPAEPLTVLWITPMRALAADTARALEAPLEAL----------QIPWSVGLRTGDTSSSER 120
              +   +L+I+P++AL  D  R L+ PL+ +          ++   VG+RTGDT + ER
Sbjct: 81  HKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQER 140

Query: 121 ARQTRRQPTVLVTTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALAR 180
           ++ TR  P +L+TTPESL LML     E +L  +  V++DE H + G+KRG  L L+L R
Sbjct: 141 SKLTRNPPDILITTPESLYLMLTSRARE-TLRGVETVIIDEVHAVAGSKRGAHLALSLER 199

Query: 181 LRRW-HPDLMVWGISATLGNQAHALEVLVPQGDGINVQGQTAKQLIIDTLLPPV------ 233
           L    H      G+SAT+ + +     L        V     +   I  ++P        
Sbjct: 200 LDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVS 259

Query: 234 -----TERFPWAGHIGLKMLPQV----VAEVDASSSCLVFTNTRAQSEIW-------FQA 277
                T     AG  G  + P +    + EV    S +VFTN+R  +E         + A
Sbjct: 260 SVASGTGEDSHAGREG-SIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAA 318

Query: 278 LLDARPDWAG----------------------VIALHHGSLSRETRDWVERALKDGQLKA 315
            L   P  A                       +   HHGS+S+E R   E+ALK G+L+ 
Sbjct: 319 RLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRC 378

Query: 316 VVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRPSRVTLVPTHSLELVE 375
           VV TSSL+LG+D   V+ V+Q+ +   VA  +QR GR+GH  G  S+    P    +LV+
Sbjct: 379 VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVD 438

Query: 376 AAAAQDAIAQRRIEARESPYKPLDVLVQHLVSMALGGGYKPDDLLVEVRGAWAYHDLTDE 435
           +A   + +   R+E    P+ PLDVL Q  V+ A     + D+    VR A  + DL   
Sbjct: 439 SAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSRVRRAAPWKDLPRR 498

Query: 436 DWAWALGFV--RHGGLSLTAYPDYRRVEPDEHGIWRV-PDARLARRHRMSVGTIVSDASI 492
            +   L  +  R+     +A+   + V   E GI    P A+L     ++ G  + D  +
Sbjct: 499 VFDATLDMLSGRYPSGDFSAFRP-KLVWNRETGILTARPGAQLL---AVTSGGTIPDRGM 554

Query: 493 HLKFWSKG---GGGKNLGSVEEGFIARLKPGDGFLFAGRLLELVRVENMTAYVRRSNAKK 549
           +     +G    G + +G ++E  +   +  D          + ++      V  +  + 
Sbjct: 555 YSVLLPEGEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRS 614

Query: 550 AAVPRWNGGRMPLSNELAQAVVERFDAAAQGHF----------EGPEMQAVRPLLQTQVR 599
           A +P W G       EL + + +     A G F          E   +  ++ L++ Q  
Sbjct: 615 ARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTIANIQGLIEEQRN 674

Query: 600 WSGL-PTREHLLAEALKSREG-WHLFLYPFAGRQVHLGLASLLAWRVSQGQAVTFSIAVN 657
            +G+ P   HL+ E  +   G W + L+   GR+VH   A  +A R+        S+  +
Sbjct: 675 ATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVAS 734

Query: 658 DYGL-ELLSATEVNWPALLNEALLSPEHLLEDVVASLNAGELALRRFREIARIAGLVFAG 716
           D G+   +  T+   P      L  PE LL+ V  ++ +  L   RFRE A  A L+   
Sbjct: 735 DDGIVARIPDTDGKLPDAA-IFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGR 793

Query: 717 YPGAPKSTRQVQASSGLFFEVFKQYDPQNLLLTQAGEEVLRDELDIRRLEQTLRHLCALK 776
            PG      Q +  +    E+ + Y P   ++ +   E L+D  D+  LE+ +R L   +
Sbjct: 794 TPGHRTPLWQQRLRASQLLEIAQGY-PDFPVILETLRECLQDVYDLPALERLMRRLNGGE 852

Query: 777 LELHRI--QRPTPLAFPLLVERMRESM--SSEKLSERIARMV 814
           +++  +    P+P A  LL   + E M  S   L+ER A ++
Sbjct: 853 IQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVL 894