Pairwise Alignments

Query, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  606 bits (1563), Expect = e-178
 Identities = 312/336 (92%), Positives = 325/336 (96%), Gaps = 3/336 (0%)

Query: 1   MALSKEAPEFDIDDEVLLMEAGI--DTESMSNEGPAVPSVRTKSKNSTALKQHKYIDYTR 58
           MALSKE PEFDIDD+VLLME GI  +T+ +S+E PAV SVRT++K+ ++LKQHKYIDY+R
Sbjct: 1   MALSKEVPEFDIDDDVLLMETGIVLETDVVSDE-PAVSSVRTRAKSGSSLKQHKYIDYSR 59

Query: 59  ALDATQLYLNEIGFSPLLTPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRG 118
           ALDATQLYLNEIGFSPLL+PEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRG
Sbjct: 60  ALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRG 119

Query: 119 LSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVK 178
           LSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVK
Sbjct: 120 LSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVK 179

Query: 179 ELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKT 238
           ELNVYLRAARELTQKLDHEPSPEEIA LLEKPV EVKRMLGLNERVSSVDVSLGPDSDKT
Sbjct: 180 ELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKT 239

Query: 239 LLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGL 298
           LLDTLTDDRPTDPCELLQDDDLSQSIDQWL ELTDKQREVV+RRFGLRGHESSTLEDVGL
Sbjct: 240 LLDTLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVGL 299

Query: 299 EIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ 334
           EIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ
Sbjct: 300 EIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ 335