Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 245 a.a., Murein hydrolase activator NlpD from Variovorax sp. SCN45

 Score =  149 bits (376), Expect = 6e-41
 Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 52  PTVTTGQYVVRKGDTMFSIAFRYGWDYKALAARNNIPVPYTIHPGQTIRFDGRTGSTPTT 111
           P    G+YVV+ GDT++ IA R G     +A  +N+  P  +  GQ +R     G++  +
Sbjct: 29  PVAGPGEYVVQPGDTLYRIASRTGRTPGEIARWSNLQDPDRLEAGQVLRVAPPGGASAPS 88

Query: 112 VVTNTGSSPSSSSKTTIITRPAGTAKPASAAKPAPAPLPPAGPAPTGWGWPSNGVLIGKF 171
                 S+P          RP     P   A   P P+ P     + WGWP+ G ++  F
Sbjct: 89  A---DASAPPPPPPRADRPRPP----PPRPAAREPDPVVPPAARRSDWGWPAQGQVVAGF 141

Query: 172 SSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRL 231
             NGS NKGIDI G+ G PV++  +G+V    + LRGYG ++++ H  +Y+S Y + R +
Sbjct: 142 --NGSSNKGIDIGGNTGDPVVSIGNGSVAVTET-LRGYGSVLMVDHGGSYMSVYTNVRSV 198

Query: 232 LVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
           LV++GQ+V+ GQ IAE+G       KLHFEIR +GK VDP Q+LP R
Sbjct: 199 LVKQGQRVQRGQKIAEIGGADAGHPKLHFEIRYRGKAVDPRQYLPAR 245