Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 303 a.a., Murein hydrolase activator NlpD from Variovorax sp. SCN45

 Score =  208 bits (529), Expect = 1e-58
 Identities = 130/292 (44%), Positives = 163/292 (55%), Gaps = 38/292 (13%)

Query: 22  LVFSSVLVGCSSSPSSGARVVDRN--------NAVPQKPTVTT----------------G 57
           L F  V+ GCS+ P   A V DR         + VP  P +TT                G
Sbjct: 15  LAFVLVIAGCST-PRGPAPVEDRGTMTRAPAPSTVPGGPPITTDANGKPLAGIENYGKPG 73

Query: 58  QYVVRKGDTMFSIAFRYGWDYKALAARNNIPVPYTIHPGQTIRFDGRTGSTPTTVVTNTG 117
            Y VR GDT+  I    G  ++ +   NNI  P  I  GQ +R    TGS  +  V    
Sbjct: 74  YYAVRPGDTIRRIGIETGQRWQDIVRWNNIDNPDLIEVGQVLRVIPPTGSGTSVAVAPPP 133

Query: 118 SSPSSSSKTTIITRPAGTAK--PASAAKPAPAPLP--PAGPAP-------TGWGWPSNGV 166
           SS S  + T  +T P   A   P++ A   PAP+   PA P          GW WP++G 
Sbjct: 134 SSGSEGAVTKPVTPPPVIAPVTPSTGATKPPAPVTASPASPGSGASGDEDLGWIWPASGS 193

Query: 167 LIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYG 226
           LI  F    + NKG DI+G  G PVLAA+DG VVYAG+GLRGYG L+I+KH++TY++AY 
Sbjct: 194 LIAGFDE--AKNKGYDISGKAGDPVLAAADGRVVYAGAGLRGYGNLIILKHNNTYLTAYA 251

Query: 227 HNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
           HN+ LLV+E Q V+ GQ IAEMGS+  DRVKLHFEIRRQGKPVDP ++LP R
Sbjct: 252 HNQTLLVKEDQSVQKGQKIAEMGSSDADRVKLHFEIRRQGKPVDPSRYLPSR 303