Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 379 a.a., Murein hydrolase activator NlpD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  197 bits (501), Expect = 3e-55
 Identities = 116/280 (41%), Positives = 158/280 (56%), Gaps = 39/280 (13%)

Query: 37  SGARVVDRNNAVPQKPTVTTGQYVVRKGDTMFSIAFRYGWDYKALAARNNIPVPYTIHPG 96
           +G  V +R      K + +   Y V+KGDT+F IA+  G D++ LA RNNI  PY ++ G
Sbjct: 101 NGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVG 160

Query: 97  QTIRFDGRTGSTPTT---VVTNTGSS-------PSSSSKTTIITRPAGTA---------- 136
           QT++  G    TP T    +T   ++       P+ +S   + ++P  T           
Sbjct: 161 QTLQV-GNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSAN 219

Query: 137 ------KPASAAKPAPAPLPPAGPA-PT-----------GWGWPSNGVLIGKFSSNGSLN 178
                 KPA+    AP  +P A    PT            W WP+ G +I  F ++   N
Sbjct: 220 KMLPNNKPAATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGN 279

Query: 179 KGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQ 238
           KGIDIAG  GQ ++A +DG VVYAG+ LRGYG L+IIKH+D Y+SAY HN  +LVRE Q+
Sbjct: 280 KGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQE 339

Query: 239 VKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
           VK GQ IA MGSTGT   +LHFEIR +GK V+PL++LP+R
Sbjct: 340 VKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR 379