Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 251 a.a., Murein hydrolase activator NlpD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  171 bits (433), Expect = 1e-47
 Identities = 107/270 (39%), Positives = 146/270 (54%), Gaps = 29/270 (10%)

Query: 7   AQRMSKTSFHRLVLGLVFSSVLVGCSSSPSSGARVVDRNNAVPQKPTVTTGQYVVRKGDT 66
           A R++K S   +V+ L    +L GCS S SS               T +   Y V++GDT
Sbjct: 3   AGRLNKKSLG-IVMLLSVGLLLAGCSGSKSSDTG------------TYSGSVYTVKRGDT 49

Query: 67  MFSIAFRYGWDYKALAARNNIPVPYTIHPGQTIRFDGRTGSTPTTVVTNTGSSPSSSSKT 126
           ++ I+   G   K LA  N I  PYTI  GQ ++  G   S+ T       S+  S++KT
Sbjct: 50  LYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRK-----STAKSTTKT 104

Query: 127 TIITRPAGTAKPASAAKPAPAPLPPAGPAPTGWGWPSNGVLIGKFSSNGSLNKGIDIAGD 186
             +T       P+SA   +    PP G     W WP+ G +I  +S+    NKGIDI+  
Sbjct: 105 ASVT-------PSSAVPKSS--WPPVGQRC--WLWPTTGKVIMPYSTADGGNKGIDISAP 153

Query: 187 LGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQVKVGQTIA 246
            G P+ AA  G VVY G+ LRGYG L++IKHS+ Y++AY HN  +LV  GQ VK GQ IA
Sbjct: 154 RGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIA 213

Query: 247 EMGSTGTDRVKLHFEIRRQGKPVDPLQFLP 276
            MGST    V+LHF+IR +   +DPL++LP
Sbjct: 214 TMGSTDAASVRLHFQIRYRATAIDPLRYLP 243