Pairwise Alignments

Query, 278 a.a., peptigoglycan-binding protein LysM from Pseudomonas simiae WCS417

Subject, 408 a.a., murein hydrolase activator NlpD from Dickeya dianthicola 67-19

 Score =  191 bits (486), Expect = 2e-53
 Identities = 125/332 (37%), Positives = 166/332 (50%), Gaps = 87/332 (26%)

Query: 33  SSPSSGARVVDRN---------NAVPQKPTVTTGQYVVRKGDTMFSIAFRYGWDYKALAA 83
           S PSS A V             N++P K + +   Y V++GDT+F IA+  G DY+ LA 
Sbjct: 78  SRPSSDAAVTTHEGKIVYNRSYNSIP-KGSYSGNSYTVKRGDTLFYIAWITGNDYRELAQ 136

Query: 84  RNNIPVPYTIHPGQTIRFDGRTGS-----------TPTTVVT------------------ 114
           RNN+  PY+++ GQ++       +           TPT V T                  
Sbjct: 137 RNNVQEPYSLNVGQSLSLGSNMNAGGSTQGMAIAGTPTAVTTSAPVESSSASSGHMLPEN 196

Query: 115 --------------NTG------------------SSPSSSSKTTII-TRPAGTAKPASA 141
                         NTG                  SSPS+  +TT + ++P       S 
Sbjct: 197 ASKASGDGRMLSSGNTGGNSGHMLPANAAAAGATQSSPSAQMQTTQVDSQPTNAYSEVSG 256

Query: 142 AKPAPAPLPPAGPAPT---------------GWGWPSNGVLIGKFSSNGSLNKGIDIAGD 186
            + A   + PA  A T                W WP++G +I  FS++   NKGIDIAG 
Sbjct: 257 KQNAGGKMLPAAGAATTLPATEPTQTNTAIASWRWPTDGKVIDSFSASEGGNKGIDIAGS 316

Query: 187 LGQPVLAASDGTVVYAGSGLRGYGELVIIKHSDTYVSAYGHNRRLLVREGQQVKVGQTIA 246
            GQ V+A + G VVYAG+ LRGYG L+IIKH+D Y+SAY HN  +LVRE Q+VK GQ IA
Sbjct: 317 RGQSVIATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNETMLVREQQEVKAGQQIA 376

Query: 247 EMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 278
            MGSTGT  V+LHFEIR +GK V+PL+FLP+R
Sbjct: 377 TMGSTGTSSVRLHFEIRYKGKSVNPLRFLPQR 408