Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1021 a.a., error-prone DNA polymerase from Rhodanobacter sp000427505 FW510-R12

 Score =  399 bits (1024), Expect = e-115
 Identities = 309/1107 (27%), Positives = 517/1107 (46%), Gaps = 101/1107 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L   +  S + G+   + L +    +   A+A+TD+ ++  +V+  + +   G+  I
Sbjct: 2    YAELHCLSNLSFLRGVASARALFERAAALGYAALAITDECSLAGIVRGLEASRATGVPLI 61

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREW--VAE 122
             G +L L +       +R+ LLA +  GY  L+ LI+   +   R      +  W  +  
Sbjct: 62   VGTELVLEDG------ARLVLLAEDRAGYATLSRLIT---VARARAAKGAYQARWKDLEG 112

Query: 123  ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLH 182
              +GL+ +    +        G  P +AE  AK    V P R ++ V+      D E + 
Sbjct: 113  DHQGLLAILCTIDRH------GTVPADAEGRAKRLATVLPQRAWIGVELHRGDRDAEAII 166

Query: 183  AAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSA 242
            A  A+    G PLVA  DV    +      +T   I  G  +         + E++L++ 
Sbjct: 167  ACAAVGAAAGLPLVAAGDVHMATRGQRALQDTVTAIRLGMPVAAAAGELFPNGERHLRTP 226

Query: 243  EEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEE 302
             E+ EL++  PE L  ++ IA  C++++    +  P   +P       + R +    +EE
Sbjct: 227  AELQELYA--PELLAETLRIAAHCHLDLGTLGYRHPVDVVPLAQAPATWLRHL----VEE 280

Query: 303  RLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGP 362
              +   P  T     A+       +  EL +I ++G+  +FL V D +++A++ G+ +  
Sbjct: 281  GAATRWPAGTPPALGAQ-------IERELALITELGYEAFFLTVHDIVRYARSRGI-LCQ 332

Query: 363  GRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAE 422
            GRGS A S+V Y   IT++DP    LLFERFL+ ER   PD DVDF  + R+ VI+Y+  
Sbjct: 333  GRGSAANSVVCYALGITEVDPERGHLLFERFLSRERAEPPDIDVDFEHERREEVIQYIYG 392

Query: 423  KYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEI 482
            +YGR+  +      +   ++ +RDV R       L DR+++++    GM    A     +
Sbjct: 393  RYGRDRAALAAAITTYRPRSAVRDVGRALDLDPVLVDRVAQLLGHWGGMEDVTA----RL 448

Query: 483  LRDFIKIDEEAAEIW-DMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVT 541
                I  D  + + W  +A +L G  R++ +H GG VI+   LT+  P+      G  V 
Sbjct: 449  AESGIDTDTPSMQRWLTLAAQLVGTPRHLSQHVGGFVISAAPLTELVPVEPATMPGRTVI 508

Query: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTL 601
            Q+DK D+E  GL+K D L L  L+++  A + + R         L IA IP +D  TY +
Sbjct: 509  QWDKSDLETMGLLKVDILALGMLSVLRRAFEHVERHHGTT----LSIATIPAEDPATYAM 564

Query: 602  LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA 661
            L++A+T  VFQ+ESR    ++ +L+P C  DL+   A+ RPGP+Q GMV  ++ R+ GR 
Sbjct: 565  LRRADTVGVFQVESRAQMAMLPRLRPTCFYDLVVQTAIIRPGPIQGGMVHPYLRRRQGRE 624

Query: 662  ELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPE 720
              +YP  +     ++ VL  T G+ ++QEQVMQ+A V AG+T G AD LRR+MG  ++  
Sbjct: 625  VASYPSDE-----VRGVLERTLGVPIFQEQVMQLAVVAAGFTAGEADQLRRSMGAWERHG 679

Query: 721  EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 780
             +   R   + G          A  +F+++  F  YGF +SH+A++ L++Y +A+LKAHY
Sbjct: 680  TLEHFRARLLSGMTGRGYAPAFADQVFEMIRGFGAYGFPESHAASFALLAYASAYLKAHY 739

Query: 781  PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGR---IIYGL 837
            P+ F+AA+L++          L ++ R   + +  PDV  S ++  +  EG    I  GL
Sbjct: 740  PSAFLAALLNSQPMGFYTTDQLAQDARRHGIEIRPPDVRVSGWESHLEGEGARAPIRLGL 799

Query: 838  GAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFH 897
              I G+       + +AR++ PFKDL D   R  L   ++R L  L  +GAL  L  + H
Sbjct: 800  REISGLRAESAARLLQARREAPFKDLSDVARRAAL---DQRDLPLLADAGALQSLAGHRH 856

Query: 898  DEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRK 957
                                           AR   SG         VE    ++G   +
Sbjct: 857  ------------------------------VARWVASG---------VEATLPLFGGTAE 877

Query: 958  A----KELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPA--RDTQTVA 1011
            A    +  T  E +  +  ++GL    HP+      +   +   + +   A  R    VA
Sbjct: 878  ATVALRAPTAGEEMAADYASMGLSTGSHPMALLRSSLLGSSYATLAEAARAGHRKRIRVA 937

Query: 1012 GMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSND 1071
            G +I +R      G  + F+TL+D +G +   ++ D     +  L++   VVV+G + + 
Sbjct: 938  G-LIGMRQSPPAAGG-VTFLTLEDETGWLNVVVWRDVAEQCRQALRSAGPVVVDGRIEHA 995

Query: 1072 DFSGGLRLRIKRVMSMEDARTNLAESL 1098
            D  G   L   RV +   A   L +++
Sbjct: 996  D--GVTHLIAARVWTAAFAAAALGDTV 1020