Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1231 a.a., DNA polymerase III subunit alpha from Rhodanobacter sp000427505 FW510-R12

 Score = 1097 bits (2836), Expect = 0.0
 Identities = 610/1251 (48%), Positives = 796/1251 (63%), Gaps = 128/1251 (10%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   + HL LH+EYSLVD  +RIK LV   V   +PAVA+TD +NM +LVKFYK    AG
Sbjct: 1    MTVRYTHLHLHSEYSLVDSTIRIKALVTACVRDGIPAVALTDDSNMFALVKFYKACTAAG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            IKPI G DLW+S  D   P  R++LL  +  GY NL+ L+SR + +GQ  G  ++E  W+
Sbjct: 61   IKPIGGCDLWISPADDPRPW-RLTLLCQHREGYLNLSRLVSRAWQEGQHGGRALVEAGWL 119

Query: 121  -AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEE 179
             A AS GLI L   +E E+G   L    + A    +   ++FP+R YLE+ R  R  +E 
Sbjct: 120  SAGASSGLIAL-LGRESEVGRIALNQGAEAALARLRPLARLFPERLYLELTRCGREGEEN 178

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
               AA+ALA +LG P++A+NDVRF+ ++DF AHE RVCI +GR L DP+R + YS++QYL
Sbjct: 179  WNTAALALAAELGLPVLASNDVRFLTQDDFGAHEARVCIQQGRVLADPKRPREYSDQQYL 238

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            K+ +EMA LF+D+PEALEN+VE+AKRC +E+K GK++LP+FP+P+G  +D + R+++  G
Sbjct: 239  KTPDEMAALFADIPEALENTVELAKRCTLELKFGKYYLPDFPVPEGHDLDSHIRELARQG 298

Query: 300  LEERLS--VLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNG 357
            L+ERL+   L    T  DY+A       RL  ELD+I++MGFPGYFLIV DFI W K NG
Sbjct: 299  LKERLANAPLAADHTLADYQA-------RLERELDVIVKMGFPGYFLIVADFINWGKQNG 351

Query: 358  VPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
            +PVGPGRGSGAGSLVA+  KITDLDPL+++LLFERFLNPERVSMPDFD+DFCMD RD VI
Sbjct: 352  IPVGPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVI 411

Query: 418  EYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE--------- 468
            +YVA KYGR+ VSQIIT+GSMAAKAV+RD  RV G  Y   DR++K+IP           
Sbjct: 412  DYVARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYNQVDRIAKLIPARPLDLTLSCA 471

Query: 469  VGMTLEKAYEQEEILRDFIKI---DEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLT 525
            +G + +   E E ++++F ++   DEEA  + D+A KLE + RN GKHAGGVVIAP+ LT
Sbjct: 472  LGRSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLT 531

Query: 526  DFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAK----- 580
            DF+P+YC+  GGG+VTQ+DKDDVEA GLVKFDFLGLRTLTIIDWA+K IN  RAK     
Sbjct: 532  DFAPLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKERPHL 591

Query: 581  -----------------------------------------------VNEEPLDIAFIPL 593
                                                           + E PLDI+ +PL
Sbjct: 592  PSGHLEPRPSMASALRAAEAARDGNPAVSSLQAGEDNAEQPAAAASSMGEGPLDISQLPL 651

Query: 594  DDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDF 653
            DD PTY LL+KA+T AVFQLES GM+ ++K  KPD  ED+IALVAL+RPGP+   ++  F
Sbjct: 652  DDAPTYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMD--LIPSF 709

Query: 654  INRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRA 713
            I RKHGR E+ YP        ++P+L  TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRRA
Sbjct: 710  IARKHGREEVDYPD-----PRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRA 764

Query: 714  MGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQT 773
            MGKKK EEMAK+R  F EG A + +  + A  IFDL+EKFAGYGFNKSH+AAY LVSYQT
Sbjct: 765  MGKKKVEEMAKERAKFREGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQT 824

Query: 774  AWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRI 833
            AWLK HYPA FMAA +S+DM NTDKVVT ++E R + + +  PDVNASE+ F   +   I
Sbjct: 825  AWLKTHYPAEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMFVAIEPRTI 884

Query: 834  IYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLG 893
             YGLGAIKGVG+G  EAI   R  G + DL DFC RVD  ++N+R L+ L+ SGALD L 
Sbjct: 885  QYGLGAIKGVGQGACEAIVAERAHGRYTDLADFCRRVDPTKLNRRVLEALVLSGALDALA 944

Query: 894  PYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYG 953
                            NRA L+  + +AIKAAEQ  R   SG  D+FG         +  
Sbjct: 945  ---------------ANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLKI 989

Query: 954  NHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFA-------RQRIIDLKPARD 1006
                  E  L+++L+GE+DTLG YL+GHP D ++ E+ + +         R    KP ++
Sbjct: 990  ELPTVPEWPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSTCPLGEIADRYQPPKPRKN 1049

Query: 1007 TQ--------------TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSA 1052
                            TVAGM+ A+R    K+GD   F+ L+D SG IE S F + +   
Sbjct: 1050 DHDDNNRFRRGPDTPWTVAGMVTAVR----KRGDSDAFVRLEDGSGLIEVSFFGELYQQI 1105

Query: 1053 QSLLQTDAMVVVEGEVSNDDFS-GGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQ 1111
              LL  D M+VV+G +  D+FS GG +LR +   S+ DA    A  L+LK+    +    
Sbjct: 1106 APLLTRDEMLVVDGGLRIDEFSGGGFQLRARSACSLADACRRHARLLQLKL--NGIGPGF 1163

Query: 1112 LRWLGELLKRHRGA-CPVTME-YTGSDAKAMLQFGETWRIDPADGLIQALR 1160
            +  L   L  +RG    VT+  Y    A+A  + GE WR+D    L++A+R
Sbjct: 1164 VEQLQHALAGYRGGRTSVTLHGYRNRHAQADFELGEAWRVDAIPDLLRAVR 1214