Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

 Score =  799 bits (2063), Expect = 0.0
 Identities = 479/1163 (41%), Positives = 677/1163 (58%), Gaps = 68/1163 (5%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            F+HL +H+ YSL++G + +  L         PA+A+TD  N+   ++F +   G+GI+PI
Sbjct: 7    FIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSGIQPI 66

Query: 65   CGADLWLSNKDPDNPLS-------RISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIER 117
             G  L L   +P  P         R+ LLA +  G+RNL  L+SR F++        I  
Sbjct: 67   PGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEPRILP 126

Query: 118  EWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPND 177
            EW+AEA++GLI L+    G +  A++GG+P+ A         +F DR Y+EVQR     +
Sbjct: 127  EWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHGADPE 186

Query: 178  EEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQ 237
                 A + LA   G PLVA N+  F  K D+EAH+  + I EGR L +  R +  +E +
Sbjct: 187  RLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSEGDRRRLTAEHR 246

Query: 238  YLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDE------- 290
            + K+  EM ELF+DLPEA  N+VEIAKRC   V+  K  LP F   D             
Sbjct: 247  F-KTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDPLEAEA 305

Query: 291  -YFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 349
               ++ + +GL  RL+   P    ++       Y DRL +E+ +I +M FPGYFLIV DF
Sbjct: 306  AELKRQAEEGLAARLAKHGPAPGLDE-----AAYHDRLAYEVSVITKMKFPGYFLIVSDF 360

Query: 350  IQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 409
            I+WAK + +PVGPGRGSGAGSLVAY  +ITDLDPL + LLFERFLNP+RVSMPDFDVDFC
Sbjct: 361  IKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFC 420

Query: 410  MDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV 469
             + RD VI YV E+YGR  V+QIITFG++ A+ V+RDV RV    YG  D+L K++P   
Sbjct: 421  QERRDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNP 480

Query: 470  G--MTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDF 527
               +TL++A E E  L+     +E     +D+A KLEG+ R+   HA G+VI   +L + 
Sbjct: 481  ANPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLHEL 540

Query: 528  SPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD 587
             P+Y D +    VTQ++   VE AGLVKFDFLGL+TLT I+ A+K +++   +     LD
Sbjct: 541  VPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQRGIE-----LD 595

Query: 588  IAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647
            I+ IPLDD  TY +L K ET  VFQ+ES GM+  +  +K D +ED++ALVAL+RPGP+ +
Sbjct: 596  ISKIPLDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPMAN 655

Query: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707
              +  + + KHGRA       DY +  L+P L  T+G+I+YQEQVMQIAQ MAGY+LG A
Sbjct: 656  --IPVYCDCKHGRAT-----PDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEA 708

Query: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767
            D+LRRAMGKK   EM KQR  F+ G A   I+   A  IFDL+ KFA YGFNKSH+AAY 
Sbjct: 709  DLLRRAMGKKIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYA 768

Query: 768  LVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV 827
            LV+YQTAWLKA+YP  F+AA ++ D  NTDK+    +E + + + +  P++N S  +F V
Sbjct: 769  LVAYQTAWLKANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFGV 828

Query: 828  NDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887
             D G+IIY + AIKGVGE  VEA+  AR D PF+   DF  R+ +K +NKRTL+ L+ +G
Sbjct: 829  KD-GKIIYAMAAIKGVGEAAVEALVAARGDRPFRSFADFATRLPVKLVNKRTLESLMAAG 887

Query: 888  ALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFG-GLFVE 946
              D L               ++NRA    A+E  +  A++      SG  D+FG G    
Sbjct: 888  CFDVL---------------EKNRARAFAAIEPIVAEAQRVEANAQSGQNDMFGSGPAAA 932

Query: 947  EDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARD 1006
                +     +A      ERL+ E D++G +LTGHP+D+Y   +++   Q   D   A  
Sbjct: 933  ASLPI----PEASPWLPSERLQKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAVR 988

Query: 1007 TQTVAGMIIALRVMK----NKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQ--TDA 1060
            +   AG + A  V K     K G +MG + L D SG  EA +F++     + LL+  T  
Sbjct: 989  SGAAAGRLAATVVSKQERRTKSGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLEPGTPL 1048

Query: 1061 MVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVKT-EALKGDQLRWLGELL 1119
            +++V  E++ +D    +R+RI     ++       + LR+ +++ E ++G   R L +  
Sbjct: 1049 LMMVAAEMNGED----VRVRINSCEKLDPVTAKHQKGLRIFLRSPEPIEGIARR-LSDGK 1103

Query: 1120 KRHRGACPVTMEYTGSDAKAMLQ 1142
               +GA  V++     DA A ++
Sbjct: 1104 SGEKGAGEVSLILLVDDAHAEVE 1126