Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1099 a.a., Error-prone DNA polymerase from Xanthobacter sp. DMC5

 Score =  323 bits (828), Expect = 5e-92
 Identities = 294/1147 (25%), Positives = 499/1147 (43%), Gaps = 117/1147 (10%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L   + +S + G      LV+T VG+ +  + + D+N +  +V+ Y     + ++ +
Sbjct: 6    YAELAAASHFSFLRGASAPAHLVRTAVGLGLDGLGIADRNTVAGVVRAY-----SALEDL 60

Query: 65   CGADLWLSNKDPDNPLSRI--------------SLLAMNGV-----------GYRNLTEL 99
               D  L   DP+    R                L+  +G            G+  L  L
Sbjct: 61   RALDEDLEADDPEADAKRAVAARARAFRLVTGARLVFCDGTADIIAYPSTRAGWGRLCRL 120

Query: 100  ISRGFIDGQRNGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQ 159
            ++ G    ++    +   + +A+  + ++++   ++G            +   L     +
Sbjct: 121  LTTGNRRAKKGDCHLSLADLLADVRDLMLIVMPGEDGS-----------DLPPLLSRLGE 169

Query: 160  VFPDRFYLEVQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIG 219
              P   +L V       D   L A  A+A     PL+A NDV +   E+ +  +   C+ 
Sbjct: 170  AAPGAVWLGVDMPFSGADRRRLAALKAIARTACVPLLAVNDVLYATPEERDLQDILTCVR 229

Query: 220  EGRALDDPRRSKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPN 279
            E   + +  R    + E++LK A EMA LF D PEA+  S  +  R +  +K  K+  P 
Sbjct: 230  ESTTIAEAGRRLLANAERHLKPAAEMARLFRDAPEAVAESGALLARIDFTLKELKYDYPE 289

Query: 280  FPIPDGMTIDEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGF 339
             P+P G T   +  ++++       +V  P+   E  E         L  EL +I ++ +
Sbjct: 290  EPVPPGWTPQAWLEELTW----RCAAVRYPEGVPEKVEKL-------LRDELALIRKLKY 338

Query: 340  PGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERV 399
              YFL + D +++A++ G+ +  GRGS A S V YV  IT +DP + DLLF RF++ ER 
Sbjct: 339  APYFLTIHDIVRFAESQGI-LCQGRGSAANSAVCYVLGITAVDPADNDLLFARFISEERR 397

Query: 400  SMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLAD 459
              PD DVDF    R+ VI+++ +KYGR+    + T      ++ IRDV +  G +  +  
Sbjct: 398  EPPDIDVDFEHARREEVIQHIYDKYGRHRAGIVATVIHYRPRSAIRDVGKALGLTEDVTA 457

Query: 460  RLSKMIPFEVGMTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVI 519
            RL+       G  +  A+ +E  L         A E   +A +L G  R++ +H GG V+
Sbjct: 458  RLASTQWGSWGRDISDAHIREAGLDPSNPFIRRAVE---LAGRLMGAPRHLSQHVGGFVL 514

Query: 520  APTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRA 579
            A  +L D  PI           ++DKDD++  GL+K D L L  LT I  AL  +     
Sbjct: 515  ARGRLDDTVPIGNAAMADRTFIEWDKDDIDVLGLMKVDVLALGMLTCIRKALDLMR---- 570

Query: 580  KVNEEPLD--IAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALV 637
              N E +D  +A +P      Y +L + ++  VFQ+ESR    ++ +LKP    DL+  V
Sbjct: 571  --NHEGIDWGLADVPSGQADVYAMLSRGDSIGVFQVESRAQINMLPRLKPQKFYDLVIQV 628

Query: 638  ALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQY---EGLKPVLAPTYGIILYQEQVMQ 694
            A+ RPGP+Q  MV  ++ R+ G  ++ YP         + L  VL  T G+ L+QEQ M+
Sbjct: 629  AIVRPGPIQGDMVHPYLRRRSGLEKVDYPSPAPHLGDKDELHSVLDKTLGVPLFQEQAMK 688

Query: 695  IAQVMAGYTLGGADMLRRAMGK-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKF 753
            +A V A ++   A+ LRRAM   +    + +     +E         D A   F+ ++ F
Sbjct: 689  LAMVAARFSAKEANRLRRAMATFRNLGTIQEFESMMVERMVARGYKRDFAARCFEQIKGF 748

Query: 754  AGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRL 813
              YGF +SH+A++  + Y ++++K  +PA F  A+L+A          ++ +     + +
Sbjct: 749  GSYGFPESHAASFAKLVYISSYIKCRHPAAFACALLNAQPMGFYAPAQIVRDAHEHGVEV 808

Query: 814  DAPDVNASEFKFTV--NDEGRIIYGLG--AIKGVGEGPVEAITEARQDGPFKDLFDFCAR 869
               DVN S    T+   D+G +   LG   + G      E +  AR  GPF  + D   R
Sbjct: 809  RPIDVNFSHHDNTLERRDDGALALRLGFRQVDGFHAEWGERLAAAR-SGPFASIEDLARR 867

Query: 870  VDL-KRINKRTLDG-LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQ 927
              L  R  K   D    RS  LDR    +H         +  + A+ L A  +A +    
Sbjct: 868  ARLPTRAVKLLADADAFRSMDLDRRAALWH------ARRLPDDDALPLFAAADARE---- 917

Query: 928  TARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYE 987
                           L VEE+  +         +   E +  +  T+ L L GHP+ E  
Sbjct: 918  ---------------LGVEEEVTL-------PRMARSEHIVADYQTVRLSLKGHPMGELR 955

Query: 988  GEIRRFARQRIIDLKPARDTQTV--AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045
               R+       +    +D   V  AG+++   V +     K  FIT++D +G     L+
Sbjct: 956  DHFRKERILTCAETSALKDGAFVRNAGVVL---VRQRPGNGKAIFITIEDETGITNIVLW 1012

Query: 1046 ADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLK-VKT 1104
                   +  +    +++VEG +      G + L  +R   + D   +LA   R++  + 
Sbjct: 1013 ERTLERFRREVMGARLLLVEGRIQKSP-EGVVHLMAQR---LTDRTADLALLSRVRQPRM 1068

Query: 1105 EALKGDQ 1111
            E  + D+
Sbjct: 1069 EVARADE 1075