Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1172 a.a., DNA polymerase III subunit alpha from Variovorax sp. OAS795

 Score =  984 bits (2543), Expect = 0.0
 Identities = 560/1193 (46%), Positives = 749/1193 (62%), Gaps = 80/1193 (6%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLRLHTE+S+VDG  RI  +V+       PA+A+TD NN+   VKFYK   G G+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVVRAAAADKQPALAITDLNNLFGAVKFYKEGRGKGVKPV 61

Query: 65   CGADLWLSN--KDPDNPLSRISLLAMNGVGYRNLTELISRGFID--GQRNGSIIIEREWV 120
             GA++++    K+P   LSRI LL  N  GY +L+EL++R +    G+       + EW+
Sbjct: 62   IGAEIFIEGLGKEP-GVLSRIVLLVQNTEGYLHLSELLARAWTQNVGRGQSQAACKLEWL 120

Query: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180
             E   GLI LS A+ G +G  LL G  + A  LA +   +FP RFY+E+QR  RP DE H
Sbjct: 121  QELQGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQRAGRPEDEPH 180

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            + AAV LA +L  P+VAT+ V+F +++D+EAHE RVCI EG  L +PRR + ++EEQY K
Sbjct: 181  VVAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQYFK 240

Query: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIP---DG--MTIDEYFRKV 295
            S+ EM  LF+D+P AL N+VEIAKRCN+ + LGK  LP+FP P   +G  M IDE+FR+ 
Sbjct: 241  SSAEMEALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDEFFRQE 300

Query: 296  SFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKN 355
            SF+GLE RL+ L P     D E  R  YV+RL FE++ I+ MGFPGYFLIV DFI+WAKN
Sbjct: 301  SFEGLEARLAHLYPDAAKRDAERPR--YVERLEFEINTILNMGFPGYFLIVGDFIKWAKN 358

Query: 356  NGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDR 415
            NG PVGPGRGSGAGSLVAY  KITDLDPLEY LLFERFLNPERVSMPDFD+DFC   RDR
Sbjct: 359  NGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDR 418

Query: 416  VIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEK 475
            VI+YV +KYGR+AVSQI TFG+MAA+A IRDV RV   SY   D +SK+IP + G  +  
Sbjct: 419  VIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVTI 478

Query: 476  AY---------------EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIA 520
             Y               E E  L   I+ +EE   + ++A+KLEG+ RN+G HAGGV+IA
Sbjct: 479  QYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIA 538

Query: 521  PTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAK 580
            P KLTDF P+Y        V+Q+DKDDVEA GLVKFDFLGL TLTI++ A   I +    
Sbjct: 539  PGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDFIVKRHK- 597

Query: 581  VNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALF 640
              +E      I LDD+ TY L  + +T AVFQ ESRGM+ ++K  +P  LEDLIAL AL+
Sbjct: 598  -GQENFAYENIRLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALY 656

Query: 641  RPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMA 700
            RPGP+   ++  F+ RKHGR E+ YPH       +  +L+ TYGI++YQEQVMQ AQ++ 
Sbjct: 657  RPGPMD--LIPSFVARKHGREEVEYPH-----PAVAEMLSETYGIMVYQEQVMQTAQILG 709

Query: 701  GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGC-ATNNIDADLAGNIFDLVEKFAGYGFN 759
            GY+LGGAD+LRRAMGKKK EEMA+ R  F  G  AT+ I  D A  IFDL+EKFAGYGFN
Sbjct: 710  GYSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFN 769

Query: 760  KSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEV-RTMKLRLDAPDV 818
            KSH+AAY L++Y T WLK HY A F  A ++ +M +TDK+  L E+  +   +  + PDV
Sbjct: 770  KSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDV 829

Query: 819  NASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQD-GPFKDLFDFCARVDLKRINK 877
            N   ++F    +  I YGLGA+KG G+  VEAI  AR++ GPFK LFDFC R+D +RINK
Sbjct: 830  NRGNYRFEPVTDKVIRYGLGAVKGTGQFAVEAIVRAREEGGPFKSLFDFCVRIDRQRINK 889

Query: 878  RTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHA 937
            RT++ LI++GA D                I +NRA L+ +++ A + A  T    ++   
Sbjct: 890  RTVEALIKAGAFDA---------------IQQNRASLIASVDRAFEFASATEA--NAAQV 932

Query: 938  DLFGGLFVEEDADVYGNHRKAKELT------LKERLKGEKDTLGLYLTGHPIDEYEGEIR 991
            D+FG      D++ +G+  +  EL       +KERL  EK  +G YL+GH  DE   E+R
Sbjct: 933  DIFG------DSE-HGSATQEPELVDATPWGVKERLTYEKTAVGFYLSGHLFDEVAHEVR 985

Query: 992  RFARQRIIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHS 1051
            RF ++ I DL  +RD Q +AG++   RV+  ++G ++    LDD+S  I+A+      ++
Sbjct: 986  RFCKREIGDLMDSRDQQVIAGIVSDFRVINGQRG-RLAIFKLDDKSDSIDATADEALINA 1044

Query: 1052 AQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQ 1111
             ++ L+ D +V+V G +         R ++++V  +  AR    + LR+ V  +A   D 
Sbjct: 1045 NRNTLKDDELVIVSGRLQPGRGGFEARFQVQQVWDLATARCRFGKFLRVAVNGKA--PDI 1102

Query: 1112 LRWLGELLKRHRGA--------CPVTMEYTGSDAKAMLQFGETWRIDPADGLI 1156
             R + +   R   +         PV +      A+  LQ GE  R  P D  +
Sbjct: 1103 ARLVKDFPPRTEQSEHGDLVQGLPVRLSMARGGAQVELQLGERARFFPTDAAL 1155