Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1105 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  368 bits (945), Expect = e-105
 Identities = 301/1087 (27%), Positives = 498/1087 (45%), Gaps = 99/1087 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +V L++ T +S + G    + L  T   M MPA+ V D++++  +V+ +      G++ I
Sbjct: 8    YVELQVTTHFSFLRGASSPEDLFATAAAMEMPALGVVDRHSVAGIVRAWDAERQTGVRAI 67

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREW--VAE 122
             G  L L++       + + +   +   Y  L  L+S G     R G      +W  VA+
Sbjct: 68   VGCRLDLTDG------TALLVYPTDKAAYGRLCRLLSIG---KTRAGKGACHLDWSDVAD 118

Query: 123  ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLH 182
             +EGL+ +      +          Q A    K   ++F +R Y+ +    RP D   L 
Sbjct: 119  WNEGLLAMLVPDRAD-------ATTQAALARTK---RLFGERTYMALSVRRRPKDAIRLR 168

Query: 183  AAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSA 242
                +A   G P +ATNDV +   E  +  +   CI E   +D   R++    ++YLK+ 
Sbjct: 169  DLSRIAAAAGVPTIATNDVLYHVPERRQLQDVVTCIREKCTIDTLGRTRERFADRYLKTG 228

Query: 243  EEMAELFSDL---PEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
             EM  LF         +  SVE A+RC   +   K+  P+     G T  E   ++++  
Sbjct: 229  AEMTRLFRRYLKDSSPVARSVEFARRCAFSLDELKYQYPDEIQVPGRTPQEELERLTW-- 286

Query: 300  LEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 359
              E+  +  P+    D + +RQ     L  EL +I Q+ +  YFL V   +  A+   + 
Sbjct: 287  --EKAPMRYPQGV--DDKVRRQ-----LEHELQLIGQLDYAPYFLTVHAIVAEARRREI- 336

Query: 360  VGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEY 419
            +  GRGS A S V YV  IT +DP+  +LLFERF++ ER   PD DVDF  + R+ VI++
Sbjct: 337  LCQGRGSAANSAVCYVLGITSIDPVRSELLFERFVSAERREPPDIDVDFEHERREEVIQW 396

Query: 420  VAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV-GMTLEKAYE 478
            + E YGR   +         A+  +R+V    GK+ GL++ ++  +   + G + E   E
Sbjct: 397  IYETYGRTRSALTAVVTRFRARGAVREV----GKALGLSEDVTAGLAGAIWGYSREGVEE 452

Query: 479  QEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGG 538
            +     +    D   A   D+AR+L    R++ +H GG V+   +L +  PI        
Sbjct: 453  KHAQELNLDLSDTRLALTLDLARQLIDTPRHLSQHPGGFVLTRDRLDELVPIEPAAMDDR 512

Query: 539  LVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPT 598
             V ++DKDD++  G +K D L L  L+ +  A + +  D+   +    D+A IP +D  T
Sbjct: 513  QVIEWDKDDIDLLGFMKVDVLALGMLSCMRRAFEFLENDKGLRH----DLATIPAEDPAT 568

Query: 599  YTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKH 658
            Y ++++A+T  VFQ+ESR     I  + P    DL+  VA+ RPGP+Q  MV  +  R++
Sbjct: 569  YAMIRRADTLGVFQIESRAQMASIPLMAPKTFYDLVIQVAIVRPGPIQGDMVHPYRRRRN 628

Query: 659  GRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-K 717
            G  E+ YP      E L+ VL  T G+ L+QEQ M++A   AG+T   AD+LRRAM   K
Sbjct: 629  GEEEVTYP-----TEELRRVLEKTLGVPLFQEQAMRVAIECAGFTASEADLLRRAMATFK 683

Query: 718  KPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 777
                ++  R   I G  +   D + A   F  +E F  YGF +SH+A++ L++Y ++W+K
Sbjct: 684  LTGGVSDFRDKLISGMVSRGYDQEFAEKTFKQIEGFGSYGFPESHAASFALIAYASSWMK 743

Query: 778  AHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIY-- 835
             H+P  F A++L+A          ++ + R   + +   DVNAS +  T+ +EGR  Y  
Sbjct: 744  CHHPDAFCASLLNAQPMGFYAPAQIVRDAREHGVEIRPIDVNASRWDCTL-EEGRGRYKA 802

Query: 836  ---GLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRL 892
               GL   + +      AI  AR D PF  + +   R  + R            GALDR+
Sbjct: 803  VRLGLRMARDLANADAAAIVTARGDRPFTSIEEIQQRAGVGR------------GALDRI 850

Query: 893  GPYFHDEPKAYQANIDRNRAVLL------TAMEEAIKAAEQTARTHDSGHADLFGGLFVE 946
            G    D         DR   +         A+     A E+  +  +           + 
Sbjct: 851  G----DADGFGSLGADRRSGLWAVKGLGNAALPLFAAADERAGKLREEAIEPTVILAEMG 906

Query: 947  EDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARD 1006
            E A+V  ++R +                GL L  HP+     E++         L+  RD
Sbjct: 907  EGAEVVEDYRAS----------------GLSLRAHPVAFLREELKARRMITCEQLRTTRD 950

Query: 1007 TQTV--AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVV 1064
             + +  AG+++  +   + KG  + FITL+D +      ++ + F   +  +   +M+ V
Sbjct: 951  GRWIELAGLVLVRQKPGSAKG--VMFITLEDETDLANLVVWTNVFEKNRRTVLGASMMGV 1008

Query: 1065 EGEVSND 1071
             G+V  +
Sbjct: 1009 RGQVQRE 1015