Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1180 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  708 bits (1827), Expect = 0.0
 Identities = 451/1173 (38%), Positives = 644/1173 (54%), Gaps = 77/1173 (6%)

Query: 3    ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK 62
            ++FV LR+ + +++++G +  K + K    +  PA A+TD+N +   + F     G G++
Sbjct: 4    SAFVPLRIFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKGEGVQ 63

Query: 63   PICGADLWLSNKDPDNPLSR------ISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIE 116
            PI GA L +    P  P +       I+L A +  GY N+  L+S   +D        + 
Sbjct: 64   PIVGAMLGVVR--PGRPSNAPAVHDWIALYAQDAGGYDNICALVSMAHLDRPLEEVPHVT 121

Query: 117  REWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPN 176
             + +   ++G+I L+A  EG I        P  A   A     +FPDR Y+E+ R   P 
Sbjct: 122  LDMLEGRTDGVIALTAGGEGAIARLFAEDQPDAALAYADRLQALFPDRLYVEICRRLDPV 181

Query: 177  DEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEE 236
            + +     + LA     PLVATN   F + E   AH+  +CI +G  ++ P R +  S +
Sbjct: 182  EGKAEPQLLDLAYDRNLPLVATNPTCFAEPEFHAAHDVMLCIADGAYVETPDR-RTSSPD 240

Query: 237  QYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIP-DGMTIDEYFRKV 295
             ++K A EM  LF DLPEAL N++ +A+RC +     K  LP+     +G  I    R  
Sbjct: 241  AWMKPAAEMKRLFEDLPEALANTLVVAQRCAVMAPKRKPILPSLAGDIEGEGI--MLRDQ 298

Query: 296  SFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKN 355
            S  GLE RL     K      EA RQ Y +RL FE+DIIIQMGFPGYFLIV DFI+WAK+
Sbjct: 299  SIAGLEARLE----KAGIIADEA-RQPYFERLKFEMDIIIQMGFPGYFLIVADFIKWAKD 353

Query: 356  NGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDR 415
            + +PVGPGRGSGAGSLVA+   ITDLDPL+  LLFERFLNPERVSMPDFD+DFC   R  
Sbjct: 354  HDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGE 413

Query: 416  VIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV--GMTL 473
            VI YV +KYG + V+QIITFG + A+AV++D  RV   SYG  DRL+K++P       TL
Sbjct: 414  VIRYVQQKYGSDHVAQIITFGKLKARAVLKDTGRVMQMSYGQVDRLAKLVPNHPTDPWTL 473

Query: 474  EKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCD 533
            E++       +     D +   + D A KLEG  R+   HA GVVI    L+   P+Y D
Sbjct: 474  ERSLNGVAEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRD 533

Query: 534  EEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPL 593
                  VTQFD   VE AGLVKFDFLGL+TL+++  A++ +     K     +D+  +  
Sbjct: 534  PRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLL-----KGRGVTVDLDTLAW 588

Query: 594  DDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDF 653
            DD   Y LLQ+ +T  VFQLES GM++ +  ++P    D+IALV+L+RPGP+ +  +  F
Sbjct: 589  DDAKVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDN--IPMF 646

Query: 654  INRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRA 713
              RK+G+ E+ YPH       LKP+L  TYGI +YQEQVMQ AQ++AGY+LG AD+LRRA
Sbjct: 647  GRRKNGQEEIEYPHI-----LLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRA 701

Query: 714  MGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQT 773
            MGKK   EM  QR  F+EGCA ++I    A  +FDL++KFAGYGFNKSH+AAY L++YQT
Sbjct: 702  MGKKIKAEMDAQRLRFVEGCAKSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQT 761

Query: 774  AWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV------ 827
            AWLKAHYPA F A  ++ D+H T+K+   ++++R M +    PD+N SE  FTV      
Sbjct: 762  AWLKAHYPAEFYAGSMAFDIHLTEKLTVFVDDMRRMGMTCLPPDLNQSEADFTVEAVPFE 821

Query: 828  NDEGR----IIYGLGAIKGVGEGPVEAITEARQ-DGPFKDLFDFCARVDLKRINKRTLDG 882
             D+ R    + Y LG +KGVGE  +E +   R+ +GPFK L D   R++ + +N+R L+ 
Sbjct: 822  GDDPRLGFAVRYALGGLKGVGEKAMEQLVAEREANGPFKHLDDLADRIEPRLLNRRQLES 881

Query: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942
            L  +GA D                I  +RA +  A E  +  A   A+  +SG   LFG 
Sbjct: 882  LAAAGAFD---------------TIHADRAGVHAAAETLLSVAASAAQARESGQGGLFGD 926

Query: 943  L-FVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYE--GEIRRFARQRII 999
            +    ED  +  +    +  T+ +R+  EK+  G Y + HP+D +    + R       I
Sbjct: 927  VETAHEDVRIPPH----QAWTVSDRMAQEKEAFGFYFSAHPVDRFRHLADARGAKSYGEI 982

Query: 1000 DLKP-------ARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF-ADAFHS 1051
              +P        R    +A M+  +R  + ++G +    T  D+SG+ +AS F  DA   
Sbjct: 983  CSQPMGMPNAEGRVMGIMAAMVEDVRWRETRRGARYANATFSDQSGQFQASCFDEDACKQ 1042

Query: 1052 AQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQ 1111
             + L +     ++  E+         R+ ++R   ME  R  +A   R+++  +    + 
Sbjct: 1043 IEELAREGDCALLHVELDRLPGEETPRVTVRR---MEPFR-EIANVSRMELVLDIEMVEA 1098

Query: 1112 LRWLGELLKRHRGA-CPVTMEYTGSDAKAMLQF 1143
            +  L  +L   RG  C V +     D KA   F
Sbjct: 1099 VAKLAAILSGSRGGRCEVFVRAPIGDGKAARVF 1131