Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1190 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  306 bits (783), Expect = 8e-87
 Identities = 291/1165 (24%), Positives = 492/1165 (42%), Gaps = 117/1165 (10%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFY----------- 53
            F  L   + YS + G      LV   + + + A+ + D+N++  +V+ Y           
Sbjct: 45   FAELVSISNYSFLHGASHPADLVGEAIALGLKAIGLADRNSVAGVVRAYVALRDAPEKAR 104

Query: 54   ------KNAMG--------------AGIKPICGADLWLSNKDPDNPLSRISLLAMNGVGY 93
                  K A G                ++ I GA L   +  PD     I +   +  G+
Sbjct: 105  AKLLEDKKARGEPESLTPEEEAGCETDLRLIVGARLIFVDGTPD-----IIVYPASRQGW 159

Query: 94   RNLTELISRGFIDGQRNGSIIIEREWVAEASEG---LIMLSAAKEGEIGIA--------- 141
              LT L+++G I   +   I+   + +    +    ++ LS A+  +   A         
Sbjct: 160  GKLTRLLTKGNIKAIKGDCILHFADLLDYLDDWRMIILPLSTAQAQQEHDAPPDYAFEDE 219

Query: 142  -----------LLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAAVALADK 190
                       +   +P   +  A++     P R +L +    +  D  H+    A++  
Sbjct: 220  AIPVPSRHLRLVPPASPPSWQEAARQLQDRMPGRVWLGLSMRYQGRDARHVAMMQAVSRD 279

Query: 191  LGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEEMAELFS 250
            +G PL+ATND+ +         +   CI EG  L         + E+++KS  EMA LFS
Sbjct: 280  IGIPLIATNDILYATSGTRPLQDVLTCIREGVTLKTAGTRLQANAERHMKSPTEMARLFS 339

Query: 251  DLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERLSVLLPK 310
              P+AL  ++      +  +K   +  P+ P+P G + D +   +       R    LP 
Sbjct: 340  ACPDALAETIRFIDGIDFTLKDLAYEYPHEPVPAGWSPDAWLEDMVRRRARRRYGRQLPP 399

Query: 311  DTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV-GPGRGSGAG 369
                            +  EL +I +  +  YFL V D +++A+    P+   GRGS A 
Sbjct: 400  KVRA-----------LIGQELRLIRRQNYAYYFLTVHDLVRFARAQKPPILCQGRGSAAN 448

Query: 370  SLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAV 429
            S+V ++  +T +DP+E+DLLF RF++ ER   PD DVDF  + R+ V++Y+  +YGR   
Sbjct: 449  SIVCFLLGVTSIDPMEHDLLFSRFVSEERNEPPDIDVDFEHERREEVMQYIYRRYGRARA 508

Query: 430  SQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILRDFIKI 489
                T     +++ +R+VA+V G S  +  RLS  +       L  A     +   F   
Sbjct: 509  GIAATVIHYRSRSALREVAKVLGLSEDVVMRLSATVWGSYSGDLGDA---RFVDAGFALD 565

Query: 490  DEEAAEIWDMARKL--EGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDD 547
            + E   +  + ++L      R++ +H GG V+   +L +  PI+          ++DKDD
Sbjct: 566  NGEIQRLRTLVQQLIRAPFPRHLSQHVGGFVLTQDRLDETVPIHNAAMADRSFIEWDKDD 625

Query: 548  VEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAET 607
            ++A  L+K D L L  L+ I  A   +N+     ++  +D   +   D   Y +L K ++
Sbjct: 626  IDALNLMKVDVLALGMLSCIRRAYALMNQHGLGRHDLTVD---LQSRDPAVYDMLCKGDS 682

Query: 608  TAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPH 667
              VFQ+ESR    ++ +LKP  L DL   VA+ RPGP++  MV  ++ R+ G  ++ YP 
Sbjct: 683  IGVFQVESRAQINMLPRLKPRNLYDLTVQVAIVRPGPIEGDMVHPYLRRRCGEEKVDYPS 742

Query: 668  SDYQY---EGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMA 723
                +   + L+ +L  TYG+ L+QEQ M++A V AG++   A+ LRRAM   +    + 
Sbjct: 743  PGTDFGPPDELEKLLKDTYGVPLFQEQAMKLAIVAAGFSSSEANQLRRAMATFRNVGTIH 802

Query: 724  KQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAP 783
              R   I G      +A+ A   F  +E F  YGF +SH+ ++  + Y +AW+K H PA 
Sbjct: 803  HFREKMINGMTARGYEAEFAARCFKQIEGFGSYGFPESHALSFARLVYVSAWIKCHQPAI 862

Query: 784  FMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGV 843
            F  A+L++          L+ + R   + +   DVN S +    N    ++    A KG 
Sbjct: 863  FACALLNSQPMGFYAPAQLVRDAREHGVAIHDVDVNMSGWD---NGLEPLLRSRHADKGE 919

Query: 844  GEGPVEAI-TEARQDGPFKDLFDFCARVDLKRINKRTL----DGLIRSGALDRLGPYFHD 898
            G G   A+    RQ   F++   + A++   R          D   R+G   R      D
Sbjct: 920  GTGRALALRLGLRQVDGFRE--QWAAQMAAARAQGGLFTSIEDMARRAGLPARALRLLAD 977

Query: 899  EPKAYQANIDRNRAVLLTAMEEAIKAAEQ------TARTHDSGHADLFGGLFVEEDADVY 952
                     DR      TA+ EA +           AR HD    +L       E+AD  
Sbjct: 978  ADACRSLGQDRR-----TALWEARRTPSDELPLFAAARRHDRAAREL------GEEADA- 1025

Query: 953  GNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAG 1012
                    + L E++  +     L L GHP+                    A++   V  
Sbjct: 1026 ----MLPAMPLAEQVMDDYAVTRLSLKGHPMQFLRPVFAAEGVLSCAQTSAAKNGARVRT 1081

Query: 1013 MIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDD 1072
              + L   +  KG+ + FIT++D +G     L+A  F   +  +    +++VEGEV    
Sbjct: 1082 AGVVLVRQRPGKGNAV-FITIEDETGITNILLWARLFELQRRPVMASRLMLVEGEVQRSK 1140

Query: 1073 FSGGLRLRIKRVMSMEDARTNLAES 1097
              G + L   R+         L++S
Sbjct: 1141 -EGVVHLMASRIHDRTADLNRLSQS 1164