Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  355 bits (911), Expect = e-101
 Identities = 299/1092 (27%), Positives = 496/1092 (45%), Gaps = 104/1092 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L   + +S   G      L +        A+A+TD+  +  +V+ ++ A    ++ I
Sbjct: 13   YAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLI 72

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             G+++ L     D P  ++ LL  N  GY+NL  LI+R     ++ G+  + R+ +    
Sbjct: 73   VGSEVQLC----DGP--KLVLLVENLTGYQNLCALITRARRRAEK-GAYQLFRDDLLLHH 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQ-VFPDRFYLEVQRTNRPNDEEHLHA 183
            +GL+ L  A +               +     W++ VF +R +L V      +D   L  
Sbjct: 126  QGLLALWVAADS-------------GDTATGAWLRSVFAERLWLAVHLHRGSDDAVRLQR 172

Query: 184  AVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAE 243
              ALA  +G   VA  DV    +      +    I +   + +  R    + E++L+S  
Sbjct: 173  LRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHLRSQA 232

Query: 244  EMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEER 303
            ++AEL+    + L  ++ IA+RC  ++    +  P   +P+G T   + R++   G+  R
Sbjct: 233  QLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQGMPLR 290

Query: 304  LSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPG 363
                 P     D  AK          EL +I ++G+  YFL V D + +A++  + +  G
Sbjct: 291  WPDG-PSGKVRDVLAK----------ELGLIEELGYESYFLTVHDIVAFARSQRI-LCQG 338

Query: 364  RGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEK 423
            RGS A S+V +V  IT+LDP+++ LLFERFL+ ER   PD DVDF  D R+ VI+YV  +
Sbjct: 339  RGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRREEVIQYVFRR 398

Query: 424  YGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEIL 483
            YGR+  +      +  A   +RDVAR  G      D L+K      G   ++  + + + 
Sbjct: 399  YGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKC----CGRWSDRIPDDQRLA 454

Query: 484  R-DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQ 542
               F         +  +A +L G  R++ +H GG VI+   L    P+         V Q
Sbjct: 455  EAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPVENAAMPERTVIQ 514

Query: 543  FDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLL 602
            +DKDD++  GL+K D L L  L+ +      +   R +     L +A IP +D  TY ++
Sbjct: 515  WDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGR----HLTLATIPSEDPATYAMI 570

Query: 603  QKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAE 662
             +AET  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q  MV  ++ R+  +  
Sbjct: 571  SRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPYLRRRLKQEP 630

Query: 663  LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEE 721
            + YP        LK V   T G+ L+QEQVM++A V A YT G AD LRR+M   K+   
Sbjct: 631  VTYPSPQ-----LKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKRHGG 685

Query: 722  MAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYP 781
            +   R   ++G   N      A  IF+ ++ F  YGF +SH+A++ L+ Y ++WLK H P
Sbjct: 686  LEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKCHEP 745

Query: 782  APFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGR----IIYGL 837
            A F  A++++          L++E R   + +   DV  S++  T+  +      I  GL
Sbjct: 746  AIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAIRMGL 805

Query: 838  GAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDL-KRINKRTLDGLIRSGALDRLGPYF 896
              ++G+ E   + + +AR   P++++ D C R  L  R   R  DG    GAL  L    
Sbjct: 806  RLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAGLDARARARLADG----GALRALAS-- 859

Query: 897  HDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHR 956
                       DR++A    A  +                  LF        ADV     
Sbjct: 860  -----------DRHQARWQVAAVQP--------------QLPLF--------ADVQALPE 886

Query: 957  KAKEL---TLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPAR--DTQTVA 1011
            +  +L   T+ E L  +  TLG  L  HP+      +R    +   +L+     D   VA
Sbjct: 887  EPVQLPVPTVGEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVA 946

Query: 1012 GMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSND 1071
            G+++  +  +   G  + F+TL+D  G +   ++       +  L    ++ V G +  +
Sbjct: 947  GLVVGRQRPQTASG--VTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRLEQE 1004

Query: 1072 DFSGGLRLRIKR 1083
            +   G+R  I R
Sbjct: 1005 N---GVRHLIAR 1013