Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

 Score = 2002 bits (5186), Expect = 0.0
 Identities = 993/1174 (84%), Positives = 1077/1174 (91%), Gaps = 1/1174 (0%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M   FVHLR+H+E+SLVDGLVRIKPL K L GMNMPAVA+TDQ+NMCSLVKFYK AMGAG
Sbjct: 1    MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            IKPICGADLWL+  DP+ PLSRI  LAM+  GYRNLTELISRG+ DGQRNG +I++REW+
Sbjct: 61   IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI 120

Query: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180
            A ASEGLI LSA KEG+IG+ALL G   EAE L ++WM +FP+RFY+EVQRTNR  DEE+
Sbjct: 121  APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEY 180

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            +HAAVALADKLGAPLVATNDVRFIK+ DF+AHETRVCIGEG  LDDPRR + YS++QYLK
Sbjct: 181  VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK 240

Query: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL 300
            SAEEMAELFSDLP+A+ N+VEIAKRCNI+V+LGK+FLP+FP P+GM ID+Y R V+ +GL
Sbjct: 241  SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGL 300

Query: 301  EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV 360
            EERL+VL PK+TT +YE KRQVY+DRL FELDIIIQMGFPGYFLIVMDFI+WAKNN VPV
Sbjct: 301  EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV 360

Query: 361  GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 420
            GPGRGSGAGSLVAYV KITDLDPL YDLLFERFLNPERVSMPDFDVDFCMDGRDRVI+YV
Sbjct: 361  GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV 420

Query: 421  AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE 480
            AE YGRNAVSQIITFG+MAAKAV+RDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
Sbjct: 421  AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE 480

Query: 481  EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV 540
            EILRDF+K DE+A EIWDMA KLEGV R  GKHAGGVVIAPTKLTDFSPI CDEEGGGLV
Sbjct: 481  EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV 540

Query: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT 600
            TQFDKDDVEAAGLVKFDFLGLRTLTII WA++ INR++AK N   L+I FIPLDD+ TY 
Sbjct: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE 600

Query: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660
            LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
Sbjct: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660

Query: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720
            AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
Sbjct: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720

Query: 721  EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 780
            EMAKQRGGFIEGC  NNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK HY
Sbjct: 721  EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY 780

Query: 781  PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI 840
            PAPFMAAVLSADMHNTDKVV L+EEVR+MKLRLDAPDVN S+FKFTVN++GRI+YGLGAI
Sbjct: 781  PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI 840

Query: 841  KGVGEGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDE 899
            KGVGEGPVEAI EAR Q GPFKDLFDFC R+DLKR+NKRTLD L+RSGALDRLGP+FHDE
Sbjct: 841  KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE 900

Query: 900  PKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAK 959
             KAY ANID NRA LL+A+ EAIKAAEQ A T DSGH DLFG +F   D DVY NHRK +
Sbjct: 901  IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR 960

Query: 960  ELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRV 1019
            ELTLKERLKGEKDTLGLYLTGHPIDEYE EIRRFARQRI+DLKP+R+TQT+AGMIIALRV
Sbjct: 961  ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV 1020

Query: 1020 MKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRL 1079
            MKNKKGDKMGF+TLDDRSGRIEASLFADAF +AQSLLQTDAMVVVEGEVSNDDFSGGLRL
Sbjct: 1021 MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL 1080

Query: 1080 RIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKA 1139
            R+K+VM+MEDART LAESLRLKV  +ALKGD+L+WLGEL+ RHRGACP+T+EYTGSDAKA
Sbjct: 1081 RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKA 1140

Query: 1140 MLQFGETWRIDPADGLIQALRDQFGRDNVFLQYR 1173
            MLQFGE W IDPADGLIQALRDQFGR+NVFLQYR
Sbjct: 1141 MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR 1174