Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  354 bits (908), Expect = e-101
 Identities = 248/877 (28%), Positives = 430/877 (49%), Gaps = 35/877 (3%)

Query: 5   FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
           +V LR  + +S + G    + LV+    +   A+A+ D+ ++  +V+ +  A     + +
Sbjct: 9   YVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKKHRFQLL 68

Query: 65  CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
            G+   +     D P + + +LA N  GY NL E I+R      +    +   +  A+A 
Sbjct: 69  IGSQFQVRC---DAPFTLV-VLACNLNGYGNLCEFITRLRRSAPKGSYRLAIGDIDAQAL 124

Query: 125 EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
              ++++              +    + +A+  +Q F  R +L V++  R +DE  LH  
Sbjct: 125 ADCVVIAVPDRHS--------DQDPMDTVARWLLQHFRGRCWLGVEQLCRFDDEMRLHRL 176

Query: 185 VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
              ++    PLVA  DVR   +     H+       G+ L +       S EQ L+    
Sbjct: 177 RQSSELTAVPLVAVGDVRMHVRSRKPLHDVLTATRIGKPLTECGFVLEPSAEQRLRGRLT 236

Query: 245 MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
           + +L+    + L  ++ +A RC+  +   ++  P+  IP+G T   + R+++  G   R 
Sbjct: 237 LGQLYP--ADLLAETLAVAARCDFSLDELRYQYPSEVIPEGETPQSHLRQLTEAGARRRW 294

Query: 305 SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
               P+ T E        +  ++  EL++I    +  YFL V D + +A++  + +  GR
Sbjct: 295 ----PQGTPE-------AFAQQIEHELELIAYKQYEHYFLTVHDIVAFARSKDI-LCQGR 342

Query: 365 GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
           GS A S+V Y   IT++DP    LLFERF++ ER   PD DVDF  + R+ VI+Y+  KY
Sbjct: 343 GSAANSVVCYCLGITEVDPGRTGLLFERFISRERDEPPDIDVDFEHERREEVIQYLYGKY 402

Query: 425 GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
           GR   +   T  S   ++ +RDV +  G + G  D L++   +  G  +     QE  L 
Sbjct: 403 GRERAALTATVISYRPRSALRDVGKALGFAEGSLDVLARQSRWWDGHAIAPERLQEAGLD 462

Query: 485 DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
                D +  ++ ++   L G  R++ +H GG V+    L+   PI         V ++D
Sbjct: 463 TG---DLKVRQLLELTSTLMGFPRHLSQHTGGFVLTQLPLSRLVPIENATMKDRTVIEWD 519

Query: 545 KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
           KDD++A GL+K D L L  LT +  A+  I   + +       +  IP  D PTY ++  
Sbjct: 520 KDDLDAVGLLKVDVLALGMLTALRKAMALIGEKQGRA----FGMQDIPDGDDPTYDMVCA 575

Query: 605 AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
           A+T  VFQ+ESR    ++ +L+P    DL+  VAL RPGP+Q G V  ++NR+ G+  ++
Sbjct: 576 ADTVGVFQIESRAQMSMLPRLRPRSYYDLVIEVALVRPGPIQGGAVHPYLNRRQGKVPVS 635

Query: 665 YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMA 723
           +P   +    LK  L  T G+ ++QEQ MQIA + AG+T G AD LRRAM   K+   + 
Sbjct: 636 FP-GPHGGRALKAALGRTMGVPIFQEQCMQIAVLSAGFTPGEADELRRAMAAWKRHGNVQ 694

Query: 724 KQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAP 783
           K     ++G      + + A +IF+ ++ F+ YGF +SH+A++ L+ Y +AW+K H+PA 
Sbjct: 695 KYEERLVKGMTDRGYELEFAQSIFEQIKGFSSYGFPESHAASFALLVYVSAWIKCHHPAE 754

Query: 784 FMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGV 843
           F+ A+L++          L+++ +   + +   DV  S+   T++ +G +  G+  + G+
Sbjct: 755 FLTALLNSQPLGFYTPSQLVQDAKRHGVVVRPVDVLHSDRDSTIDADGAVRLGMRLVSGI 814

Query: 844 GEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTL 880
           G+   E I +AR    F++  D   R  L +   + L
Sbjct: 815 GQDATERIVQARAQQAFRNAQDLARRAGLDQPQMKAL 851