Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1144 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1330 bits (3443), Expect = 0.0
 Identities = 684/1162 (58%), Positives = 860/1162 (74%), Gaps = 24/1162 (2%)

Query: 16   LVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPICGADLWLSNKD 75
            ++DGL +  PLVK    + MPA+A+TD  N+C LVKFY    GAGIKPI GAD  + N+ 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 76   PDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEASEGLIMLSAAKE 135
              + L+ +++LA N  GY+NLT LIS+ +  G      IIER+W+ E  EGLI+LS  + 
Sbjct: 61   LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRM 120

Query: 136  GEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAAVALADKLGAPL 195
            G++G  LL GN    E     +   FPDR++LE+ RT R ++E +LHAAV LA+  G P+
Sbjct: 121  GDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPV 180

Query: 196  VATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEEMAELFSDLPEA 255
            VATNDVRF++ +DF+AHE RV I +G  LDDP+R +NYS +QY++S EEM ELFSD+PEA
Sbjct: 181  VATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEA 240

Query: 256  LENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERLSVLLPKDTTED 315
            LEN+VEIAKRCN+ V+LG++FLP FP  D MT ++Y  K + +GLEERL+ L P +  E+
Sbjct: 241  LENTVEIAKRCNVTVRLGEYFLPQFPTGD-MTTEDYLVKKAKEGLEERLAFLFPDE--EE 297

Query: 316  YEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYV 375
             + +R  Y +RL+ EL +I QMGFPGYFLIVM+FIQW+K+NGVPVGPGRGSGAGSLVAY 
Sbjct: 298  RKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYA 357

Query: 376  QKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITF 435
             KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+ RD+VIE+VA+ YGR+AVSQIITF
Sbjct: 358  LKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITF 417

Query: 436  GSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILRDFIKIDEEAAE 495
            G+MAAKAVIRDV RV G  YG  DR+SK++P + GMTL KA+E E  L +  + DEE   
Sbjct: 418  GTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRA 477

Query: 496  IWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVK 555
            + DMARKLEGV RN GKHAGGVVIAPTK+TDF+P+YCDEEG   VTQFDK DVE AGLVK
Sbjct: 478  LIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVK 537

Query: 556  FDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLES 615
            FDFLGLRTLTII+WAL+ IN+ RAK  E PLDIA IPLDDK ++ +LQ++ETTAVFQLES
Sbjct: 538  FDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLES 597

Query: 616  RGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGL 675
            RGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR EL+YP   +Q+E L
Sbjct: 598  RGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESL 657

Query: 676  KPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCAT 735
            KPVL PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAKQR  F EG   
Sbjct: 658  KPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKK 717

Query: 736  NNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHN 795
            N ID +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKAHYPA FMAAV++ADM N
Sbjct: 718  NGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDN 777

Query: 796  TDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEAR 855
            T+KVV L++E   M L++  PD+N+  + F VNDEG I+YG+GAIKGVGEGP+EAI +AR
Sbjct: 778  TEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDAR 837

Query: 856  -QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVL 914
             Q G F++LFD CAR D K++N+R L+ LI SGA DRLGP+               RA L
Sbjct: 838  NQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH---------------RAAL 882

Query: 915  LTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTL 974
            + ++ +A+KAA+Q A+    G  D+F G+  EE   +  ++   +    +  L GE++TL
Sbjct: 883  MNSLGDALKAADQHAKAEAIGQTDMF-GVLAEEPEQIEQSYASCQPWPEQVVLDGERETL 941

Query: 975  GLYLTGHPIDEYEGEIRRF-ARQRIIDLKPAR--DTQTVAGMIIALRVMKNKKGDKMGFI 1031
            GLYLTGHPI++Y  EI R+    R+ D+ P       T AG++IA RVM  K+G+++G  
Sbjct: 942  GLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGIC 1001

Query: 1032 TLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDAR 1091
            TLDDRSGR+E  LF DA    Q LL+ D +++V G+VS DDFSGGL++  + VM +++AR
Sbjct: 1002 TLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAR 1061

Query: 1092 TNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKAMLQFGETWRID 1150
               A  L + +    +    L  L + L+ HR G  PV + Y  +DA+A L+FG TWR+ 
Sbjct: 1062 EKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVS 1121

Query: 1151 PADGLIQALRDQFGRDNVFLQY 1172
            P+D L+  LR   G + V L++
Sbjct: 1122 PSDRLLNDLRGLIGSEQVELEF 1143