Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA polymerase III subunit alpha (NCBI) from Escherichia coli BW25113

 Score = 1339 bits (3466), Expect = 0.0
 Identities = 687/1173 (58%), Positives = 871/1173 (74%), Gaps = 24/1173 (2%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H++YS++DGL +  PLVK    + MPA+A+TD  N+C LVKFY    GAGIKPI
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD  +      + L+ +++LA N  GY+NLT LIS+ +  G      II+R+W+ E +
Sbjct: 66   VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
            EGLI+LS  + G++G +LL GN    +     + + FPDR++LE+ RT RP++E +LHAA
Sbjct: 126  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            V LA+  G P+VATNDVRFI   DF+AHE RV I +G  LDDP+R +NYS +QY++S EE
Sbjct: 186  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELF+D+PEAL N+VEIAKRCN+ V+LG++FLP FP  D M+ ++Y  K + +GLEERL
Sbjct: 246  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
            + L P +  E+   +R  Y +RL  EL +I QMGFPGYFLIVM+FIQW+K+NGVPVGPGR
Sbjct: 305  AFLFPDE--EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+ RD+VIE+VA+ Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR+AVSQIITFG+MAAKAVIRDV RV G  YG  DR+SK+IP + GMTL KA+E E  L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLP 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +  + DEE   + DMARKLEGV RN GKHAGGVVIAPTK+TDF+P+YCDEEG   VTQFD
Sbjct: 483  EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K DVE AGLVKFDFLGLRTLTII+WAL+ IN+ RAK  E PLDIA IPLDDK ++ +LQ+
Sbjct: 543  KSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
            +ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR E++
Sbjct: 603  SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP   +Q+E LKPVL PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F EG   N I+A+LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKAHYPA F
Sbjct: 723  QRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV++ADM NT+KVV L++E   M L++  PD+N+  + F VND+G I+YG+GAIKGVG
Sbjct: 783  MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842

Query: 845  EGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAY 903
            EGP+EAI EAR + G F++LFD CAR D K++N+R L+ LI SGA DRLGP+        
Sbjct: 843  EGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH-------- 894

Query: 904  QANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL 963
                   RA L+ ++ +A+KAA+Q A+    G AD+F G+  EE   +  ++   +    
Sbjct: 895  -------RAALMNSLGDALKAADQHAKAEAIGQADMF-GVLAEEPEQIEQSYASCQPWPE 946

Query: 964  KERLKGEKDTLGLYLTGHPIDEYEGEIRRF-ARQRIIDLKPARDTQ--TVAGMIIALRVM 1020
            +  L GE++TLGLYLTGHPI++Y  EI R+    R+ D+ P    +  T AG+++A RVM
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVM 1006

Query: 1021 KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR 1080
              K+G+++G  TLDDRSGR+E  LF DA    Q LL+ D +++V G+VS DDFSGGL++ 
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066

Query: 1081 IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKA 1139
             + VM +++AR   A  L + +    +    L  L + L+ HR G  PV + Y  +DA+A
Sbjct: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126

Query: 1140 MLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
             L+FG TWR+ P+D L+  LR   G + V L++
Sbjct: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159