Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA-directed DNA polymerase III (polc) from Enterobacter asburiae PDN3

 Score = 1345 bits (3482), Expect = 0.0
 Identities = 688/1173 (58%), Positives = 871/1173 (74%), Gaps = 24/1173 (2%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H++YS++DGL +  PLVK    + MPA+A+TD  N+C LVKFY  A GAGIKPI
Sbjct: 6    FVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHGAGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD  + +    + +++IS+LAMN  GY+NLT LIS+ +  G       I+R+W+AE +
Sbjct: 66   VGADFHVQSDLIGDEMTQISVLAMNNTGYQNLTLLISKAYQRGYGALGPWIDRDWLAELN 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
            EGL+++S  + G++G  LL GN    +     + + FPDR+YLE+ RT R ++E +LHAA
Sbjct: 126  EGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYLELIRTGRQDEESYLHAA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            VALA++ G P+VATNDVRF++  DF+AHE RV I +G  LDDP+R +NYS +QY++S EE
Sbjct: 186  VALAEERGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELFSD+PEALENSVEIAKRCN+ V+LG++FLP FP  D MT +++    S +GLEERL
Sbjct: 246  MCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGD-MTTEDFLVVKSKEGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
              L P +     + KR  Y +RL+ EL +I QMGFPGYFLIVM+FIQW+K+NGVPVGPGR
Sbjct: 305  EFLFPDEAVR--KEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+ RD+VIE+VA+ Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR+AVSQIITFG+MAAKAVIRDV RV G  YG  DR+SK++P + GMTL KA+E E  L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLP 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +  + DEE   + DMARKLEGV RN GKHAGGVVIAPTK+TDF+P+YCDE G   VTQFD
Sbjct: 483  EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGEHPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K+DVE AGLVKFDFLGLRTLTIIDWALK IN  R K   EP+DIA IPLDDK ++ +LQ+
Sbjct: 543  KNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLEPIDIAAIPLDDKKSFDMLQR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
            +ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR E++
Sbjct: 603  SETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEIS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP   +Q+E LKPVL PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F +G   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKAHYPA F
Sbjct: 723  QRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV++ADM NT+KVV L++E   M L++  PD+N+  + F VND+G I+YG+GAIKGVG
Sbjct: 783  MAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842

Query: 845  EGPVEAITEARQDGP-FKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAY 903
            EGP+EAI EAR +G  F++LFD CAR D K++N+R L+ LI SGA DRLGP+        
Sbjct: 843  EGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH-------- 894

Query: 904  QANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL 963
                   RA L+ ++ +A+KAA+Q A+    G AD+F G+  EE   +  ++   +    
Sbjct: 895  -------RAALMNSLGDALKAADQHAKAEAIGQADMF-GVLAEEPEQIEQSYSNCQPWPE 946

Query: 964  KERLKGEKDTLGLYLTGHPIDEYEGEIRRF-ARQRIIDLKPAR--DTQTVAGMIIALRVM 1020
            +  L GE++TLGLYLTGHPI++Y  EI R+    R+ D+ P       T AG++IA RVM
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYIKEIERYVGGHRLKDMHPTERGKITTAAGLVIAARVM 1006

Query: 1021 KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR 1080
              K+G+++G  TLDDRSGR+E  LF DA    Q LL+ D +++V G+VS DDFSGGL++ 
Sbjct: 1007 VTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMT 1066

Query: 1081 IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKA 1139
             + VM +++AR   A  L + +    +    L  L + L+ HR G  PV + Y  +DA+A
Sbjct: 1067 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1126

Query: 1140 MLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
             L+FG TWR+ P+D L+  LR   G + V L++
Sbjct: 1127 RLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159