Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1160 a.a., DNA polymerase III subunit alpha from Dickeya dadantii 3937

 Score = 1332 bits (3448), Expect = 0.0
 Identities = 686/1173 (58%), Positives = 859/1173 (73%), Gaps = 24/1173 (2%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H++YS++DGL +  PLVK    + MPA+A+TD  N+C LVKFY  A GAGIKPI
Sbjct: 6    FVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD +L +++  + L+ +++LAMN  GY+NLT LISR +  G       I+R W+ E  
Sbjct: 66   IGADFYLQSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGYGADGPTIDRAWLVEHQ 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
             GL++LS  + G+IG  LL GN    E     + Q FP RFYLE+ RT RP++E +LHAA
Sbjct: 126  AGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDEESYLHAA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            V LA   G P+VATNDV FI ++DFEAHE RV I +G  LDDP+R KNYS +QY++S EE
Sbjct: 186  VELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPKNYSVQQYMRSEEE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELF+D+PEAL N+VEIAKRCN+ ++LG++FLP FP  D M+ ++Y    S  GLEERL
Sbjct: 246  MCELFADIPEALINTVEIAKRCNVTIRLGEYFLPQFPTGD-MSTEDYLVMCSKKGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
            + L P +  E    +R  Y +RL  EL++I QMGFPGYFLIVM+FIQW+K+N VPVGPGR
Sbjct: 305  TFLFPDE--EVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDVPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCM+ RD VI++VA+ Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVADMY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR+AVSQIITFG+MAAKAVIRDV RV G  YG  DR+SK++P + GMTLEKA+  E  L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQLG 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +  + DEE   + DMARKLEGV RN GKHAGGVVI+PTK+TDF+P+YCD EG   VTQFD
Sbjct: 483  EIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNHPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K DVE AGLVKFDFLGLRTLTII+WAL+ IN  RAK   EP+DIA IPLDDK ++ +LQ+
Sbjct: 543  KSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELEPIDIAAIPLDDKKSFDMLQR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
            +ETTAVFQLESRGMK+LIK+LKPDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR  ++
Sbjct: 603  SETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP  ++Q+E LKPVL PTYGIILYQEQVMQIAQV+AGYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F EG  T  +D +L+  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKAHYPA F
Sbjct: 723  QRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV++ADM NTDK+V L++E   M L++  PD+N+  + F VND+G I+YG+GAIKGVG
Sbjct: 783  MAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVG 842

Query: 845  EGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAY 903
            EGP+EAI EAR  DG F+DLFD CAR D+K++N+R L+ LI SGA DRLGP+        
Sbjct: 843  EGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPH-------- 894

Query: 904  QANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL 963
                   RA L+ ++ +A+K+AEQ A+    G AD+F G+  E    V  ++        
Sbjct: 895  -------RAALMNSLADAMKSAEQHAKAEAIGQADMF-GVLAETPEQVEQSYSTVPPWPE 946

Query: 964  KERLKGEKDTLGLYLTGHPIDEYEGEIRRFA-RQRIIDLKPAR--DTQTVAGMIIALRVM 1020
            +  L GE++TLGLYLTGHPI++Y  EI R+A   R+ D+ P       T  G+++A RVM
Sbjct: 947  QVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLAARVM 1006

Query: 1021 KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR 1080
              K+G+++G  TLDDRSGR+E  LF DA    Q LL+ D +++  G+VS DDFSGGL++ 
Sbjct: 1007 VTKRGNRIGVCTLDDRSGRLEVMLFTDALDKYQHLLEQDRILIASGQVSFDDFSGGLKMT 1066

Query: 1081 IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAKA 1139
            ++ +M + +AR   A  L + +    +    L  L + L+ HR G  PV + Y   DA+A
Sbjct: 1067 VRELMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRQDARA 1126

Query: 1140 MLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
             L+FG  WRI P DGL+  LR   G + V L++
Sbjct: 1127 RLRFGAAWRITPTDGLLNDLRTLVGNEQVELEF 1159