Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1154 a.a., DNA polymerase III subunit alpha from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  730 bits (1884), Expect = 0.0
 Identities = 444/1135 (39%), Positives = 637/1135 (56%), Gaps = 82/1135 (7%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+ + YSL++G ++   + K      MPAV V D+ N+   ++F + A  AG++PI
Sbjct: 10   FVHLRVRSAYSLLEGAIKAAKVGKLAADSGMPAVGVADRANLFGALEFSQTAKDAGVQPI 69

Query: 65   CGADLWLSNKDPD-----NPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREW 119
                L +             +  + LLA +  G+ NL  L S  ++D        +  E 
Sbjct: 70   VACALPVFGIGGQINARWAKVPTVVLLAQDTAGWLNLCALSSSAYLDAGEMAEPGVAWEQ 129

Query: 120  VAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEE 179
            V   SEGLI+LS   +G +      G   E           F DRFY+E+QR    +++ 
Sbjct: 130  VVARSEGLILLSGGPDGPVDPLFAQGKKAEGAAALAAMRAAFGDRFYVELQRHGLEDEKR 189

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
                 V  A     PLVATNDV + K    ++H+  +CI +G A       +  + E + 
Sbjct: 190  AEPGLVEWAYANDVPLVATNDVYYAKAGQAKSHDALLCIADG-AFTGQEDRRRITGEHWF 248

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            K A  M E F+DLPEA +N+++IA+RC   V      LP F    G +  +     + +G
Sbjct: 249  KPAAVMREQFADLPEACDNTIDIARRCAFLVNTHAPILPRFDTGAGRSEADELAHQAREG 308

Query: 300  LEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 359
            L+ RL+ + P    E+Y         RL +E+ II QMGFPGYFLIV DFI+WAK +G+P
Sbjct: 309  LKVRLTEVTPAVPEEEYWT-------RLEWEVGIIQQMGFPGYFLIVSDFIKWAKTHGIP 361

Query: 360  VGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEY 419
            VGPGRGSGAGSLVA+   ITDLDPL + LLFERFLNPERVSMPDFD+DFC + R+ VI+Y
Sbjct: 362  VGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIDY 421

Query: 420  VAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE--VGMTLEKAY 477
            V ++YG++ V+QIITFG++ A+AV+RDV RV     G  DRL KM+P      +TL +A 
Sbjct: 422  VQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAAPVTLAQAI 481

Query: 478  EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGG 537
            + E  L++    +     + + A +LEG+ RN   HA G+VI    LT+  P+Y D    
Sbjct: 482  DIEPRLKEARDAEPAVKTLLETALELEGLYRNASTHAAGIVIGDRPLTELVPLYQDPRST 541

Query: 538  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKP 597
               +QF+   VE AGLVKFDFLGL+TLT++D A   + R  A       D   +PLDD  
Sbjct: 542  IPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGA-----AKDWNSLPLDDAR 596

Query: 598  TYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
            TY L+   +T  VFQLES+GM++ ++K++   +E++ AL++L+RPGP++  M+D +I+RK
Sbjct: 597  TYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPME--MIDTYIDRK 654

Query: 658  HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 717
             GRAE+     DY +  LK VL  TYG+I+YQEQVM+IAQV+AGY+LG AD+LRRAMGKK
Sbjct: 655  FGRAEV-----DYLHPSLKEVLTETYGVIIYQEQVMKIAQVLAGYSLGEADLLRRAMGKK 709

Query: 718  KPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 777
            K EEM  QR  F++G A   +    +G+IFDLV KFAGYGFNKSH+AAY L+S+QT WLK
Sbjct: 710  KKEEMDFQRLRFVKGAAEKAVPEAQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLK 769

Query: 778  AHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV---NDEGRII 834
            A+ P  F AA +S D+ NTDK+    ++ +   + + APD+N S   F V   +D+G ++
Sbjct: 770  ANQPVEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLAPDINRSSADFDVAWDDDKGAVL 829

Query: 835  YGLGAIKGVGEGPVEAITEARQ-DGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLG 893
            Y LGAI+ VG   ++ + E R+  G F D+FDF  RVD + +NKR L+GL ++GA D   
Sbjct: 830  YALGAIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFD--- 886

Query: 894  PYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYG 953
                        +I  NR  LL   +  +   +  A    S    LFGG    + A    
Sbjct: 887  ------------SIHTNRRQLLEQADVLMAYCQSVAAERASSQVSLFGG----DQAHAAR 930

Query: 954  NHRKAKELTL-KERLKGEKDTLGLYLTGHPIDEYEGEIRR----FARQRIIDLKPARDTQ 1008
               K+ E  +  ERL  E   +G YL+GHP+DE    ++R    F  + I   +   +  
Sbjct: 931  PRLKSVEPWVGPERLDHELSAVGFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAF 990

Query: 1009 TVAGMIIALRVMKN-KKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVV--- 1064
             +AG++   +   + + G+K  F+T  D +G  E     +     + +L+  A V+V   
Sbjct: 991  QMAGVVRRKQERASARTGEKFAFVTFSDPTGEFECLFPPEQLRKCREVLEPGASVMVRVR 1050

Query: 1065 ----EGEVS------------NDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVK 1103
                EGEV              DD + GLR+ +        AR+  AE+L+ +++
Sbjct: 1051 AKSSEGEVRFFGDDASQMDNLLDDANIGLRIHV-------SARSADAEALKARLE 1098