Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1117 a.a., error-prone DNA polymerase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  316 bits (809), Expect = 8e-90
 Identities = 301/1121 (26%), Positives = 484/1121 (43%), Gaps = 109/1121 (9%)

Query: 8    LRLHTEYSLVD-----GLVRIKPLVKTLV--GMNMPAVA-----------VTDQNNMCSL 49
            LR H+   L D     G+VR    ++T+   G++ P V            V D  N  +L
Sbjct: 33   LRGHSGLGLADRNTVSGVVRAWSALRTIREDGLSPPDVVRDGGGPGEVIYVEDPLNDPAL 92

Query: 50   VKFYKNAMGAGIKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQR 109
             +  K+   A  K   GA L  ++  PD     I        G+  LT L++ G      
Sbjct: 93   SQMVKDR-AATFKLATGARLVFNDGTPD-----IIAYPETRAGWGRLTRLLTLGN----- 141

Query: 110  NGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEV 169
                   R    +   GL  L AA E  + I +        + +  +     P   +L  
Sbjct: 142  ------RRAVKGQCEIGLRDLLAASEDLLLILMPDARLDGVDKVLAQLTDASPGAVWLGA 195

Query: 170  QRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRR 229
                + +D   L     L+++ GAPL+A N+V +      +  +   CI EG  ++D  R
Sbjct: 196  VMGRKGDDRRRLSRLKTLSERSGAPLLAVNNVLYHDAIQRDLQDVLTCIREGVTIEDAGR 255

Query: 230  SKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTID 289
              N + E++LK   EMA LF D PEAL  +  +  R   ++    +  P    P   T  
Sbjct: 256  RLNANAERWLKPPAEMARLFRDAPEALVETQHVLSRIGFDLGDISYQYPEETTPPDETPQ 315

Query: 290  EYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 349
             +  ++++   E R    +P         K +  +D+   EL  I + G+  YFL + D 
Sbjct: 316  GWLEQLTWRHAEMRYPDGVPH--------KVKALLDK---ELIFIAKAGYAPYFLTIYDI 364

Query: 350  IQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 409
            ++ A +  + +  GRGS A S V YV  IT +DP E DLLFERFL+ +R   PD DVDF 
Sbjct: 365  VRVANDKRI-LCQGRGSAANSAVCYVLGITAVDPAESDLLFERFLSTDRGEPPDIDVDFE 423

Query: 410  MDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEV 469
             + R+ +I+++  +YGR       T      K+ IRDV +  G +  +  RL+       
Sbjct: 424  HERREEIIQHIYTRYGRARAGIAATVIRYRPKSAIRDVGKALGLTEDVTARLASSQWGSW 483

Query: 470  GMTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSP 529
            G  + + + ++  L     + + A +   +A +L    R++ +H GG V+   +L +  P
Sbjct: 484  GSEIGERHVKQAGLDPANPMIQRAVK---LAMRLLNFPRHLSQHVGGFVLTQDRLDELVP 540

Query: 530  IYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIA 589
            I           ++DKDD++A  L+K D L L  LT I  A   I         +   + 
Sbjct: 541  IGNAAMPDRTFIEWDKDDIDALRLMKVDVLALGMLTCIRKAFDLIRAHHG----DDWALH 596

Query: 590  FIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGM 649
             IP DD   Y +L K ++  VFQ+ESR    ++ +LKP  L DL+  VA+ RPGP+Q  M
Sbjct: 597  TIPRDDPAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRRLYDLVIQVAIVRPGPIQGDM 656

Query: 650  VDDFINRKHGRAELAY--PHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707
            V  ++ R++G  E  Y  P   Y ++ L+ VL  T G+ L+QEQ M++A V A +    A
Sbjct: 657  VHPYLRRRNGLEEPEYSKPGPQYPHDELEQVLKKTLGVPLFQEQAMKVAMVAAEFNEKEA 716

Query: 708  DMLRRAMGKKKPE-EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAY 766
            + LR+AMG  + +  +       +        D   A   FD ++ F  YGF +SH+A++
Sbjct: 717  NGLRKAMGTFRGDGTLHNYEDRMVGRMIERGYDPTFAQRCFDQIKGFGSYGFPESHAASF 776

Query: 767  GLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFT 826
              + Y ++W+K HYPA F  A+L++          L+ + R   + +   DV+ S +  +
Sbjct: 777  AQLVYVSSWIKHHYPAAFACALLNSQPMGFYAPAQLVRDAREHGVEVRPVDVSYSGWNNS 836

Query: 827  VNDEGR---IIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGL 883
            +    R   +  GL  I+G  E   EA+  AR                L  I        
Sbjct: 837  LEGSDRTPALRIGLRQIEGFREDWAEALAAAR-------------AFSLSNIETLARRAA 883

Query: 884  IRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGL 943
            + S A+ +L     D        +DR  A+       A++     A             L
Sbjct: 884  LSSAAMRKLA----DADAFRSLGLDRREALW------AVRRLPDDAPL----------PL 923

Query: 944  FVEEDADVYGNHRKAK--ELTLKERLKGEKDTLGLYLTGH------PIDEYEGEIRRFAR 995
            F   DA   G    A+   + L E +  +  TL L L  H      PI E EG +     
Sbjct: 924  FAAADARELGAEPDARLPVMPLGEHVAADYQTLRLSLKAHPMAILRPIFEAEGLLNCAQ- 982

Query: 996  QRIIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSL 1055
                D +       VAG+++  +  +  KG+ + F+TL+D +G I   L+A  F   +  
Sbjct: 983  ---TDARRGGALVRVAGVVLVRQ--RPGKGNAI-FVTLEDETGIINVVLWARMFEQFRRE 1036

Query: 1056 LQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAE 1096
            +    ++ VEG V      G + L  +RV+      + L++
Sbjct: 1037 VMAARLMAVEGVVEKSP-EGVVHLVARRVIDRSSELSRLSQ 1076