Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1048 a.a., Error-prone DNA polymerase from Azospirillum sp. SherDot2

 Score =  394 bits (1011), Expect = e-113
 Identities = 319/1099 (29%), Positives = 513/1099 (46%), Gaps = 99/1099 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L+L T +S ++G      L  T   + + AV VTD+N++  +V+ +  A   GI+P+
Sbjct: 4    YAELQLATNFSFLEGASHPDELAMTAAALGLAAVGVTDRNSLAGVVQMHVAAKKVGIRPL 63

Query: 65   CGADLWLSNKDPDNPLSRISLLAM--NGVGYRNLTELISRGFIDGQRNGSIIIEREWVAE 122
             G  L L++ D        SLLA   +   Y  L+ L++ G +   + G   I R  V  
Sbjct: 64   IGCRLDLTDAD--------SLLAYPTDRAAYARLSRLLTLGKMRAPK-GECFIARTDVLA 114

Query: 123  ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLA--KEWMQ-VFPDRFYLEVQRTNRPNDEE 179
             +EG++ L           LLG + ++   L   + W   +   + YL      + +D  
Sbjct: 115  HAEGMLFL-----------LLGPDRRDETFLRELRAWRSGLARGQLYLAASHRYQGDDAR 163

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
             L     LA+  G PLVATNDV +      E  +   CI     +D+     + + E++L
Sbjct: 164  RLRWLAGLAEAEGVPLVATNDVLYHGAGRRELADVMTCIRHHTTIDEAGWRLSANAERHL 223

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            K A EM  LF D P+A+  ++EIA+ C   ++  ++  P+  + +G    E    +++DG
Sbjct: 224  KPAVEMMRLFRDHPDAVARTLEIAEACRFSLEELRYDYPD-EVAEGRDPQETLVALTWDG 282

Query: 300  LEERLSVLLPKDTTEDY--EAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNG 357
              +R     P D       +A R+  V+R   EL +I +  F  YFL V D +++A+   
Sbjct: 283  AAKRY----PSDRFPGGIPDAVRET-VER---ELALIAEQRFAPYFLTVHDIVRFAREQD 334

Query: 358  VPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
            + +  GRGS A S V Y   IT +DP E DLLFERF++  R   PD DVDF  + R+ VI
Sbjct: 335  I-LCQGRGSAANSAVCYCLGITSVDPTEVDLLFERFISSARGEPPDIDVDFEHERREEVI 393

Query: 418  EYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAY 477
            +Y+  KYGR       T     A++ +R+V +  G S  L  RL+  I    G  ++   
Sbjct: 394  QYIYGKYGRARAGLTATVIRYRARSALREVGKAMGLSADLVARLTGSIWGWGGQGVD--- 450

Query: 478  EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGG 537
            E           D       ++A +L G  R++ +H GG VI    L+D  P+       
Sbjct: 451  EDRARKLGVDPDDPRLKRTLELATELMGFPRHLSQHVGGFVITRGPLSDLCPVANAAMKD 510

Query: 538  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKP 597
                ++DKDD++A G++K D L L  LT I  A   I     +V+ +   +A +P DD  
Sbjct: 511  RSTIEWDKDDIDALGILKVDVLALGMLTCIHRAFDLIE----QVHGQRWALATLPQDDPA 566

Query: 598  TYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
             Y +L +A++  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q GMV  ++ R+
Sbjct: 567  VYDMLGRADSLGVFQVESRAQMSMLPRLRPKKFYDLVIEVAIVRPGPIQGGMVHPYLRRR 626

Query: 658  HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK- 716
             G  ++ YP        L+PVL+ T G+ L+QEQ M++A V AG+T   AD LRRAM   
Sbjct: 627  SGAEDITYP-----MPVLEPVLSRTLGVPLFQEQAMKVAMVGAGFTAEEADQLRRAMAAF 681

Query: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
            +K  ++ +    FI G      D   A   F  +E F  YGF +SH+A++ L+ Y +AW+
Sbjct: 682  RKSGQVERFHDKFIAGMTAKGCDPAFAERCFKQIEGFGEYGFPESHAASFALLVYVSAWI 741

Query: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYG 836
            K H+PA F AA+L++          ++ + R   + +  PDVN S +   V     +  G
Sbjct: 742  KHHHPAIFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPPDVNLSGWDCAVEGSSSLRLG 801

Query: 837  LGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYF 896
            L  IKG      +++  +R  G + D +D   R    R+    L+ L ++ A   +G   
Sbjct: 802  LRLIKGFTPQHADSVVLSRAGG-YSDPYDLWRRA---RLPVPALEKLAKADAFRSVG--- 854

Query: 897  HDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHR 956
                      +DR  A+       A++A             D    LF   D   Y    
Sbjct: 855  ----------LDRRAALW------AVRAL-----------GDQPLPLFARLDGPPYNPMA 887

Query: 957  KAKELTLKERLKGEK-----DTLGLYLTGHPIDEYEGEIRRFA-RQRIIDLKPARDTQTV 1010
            +  E  L     GE       +L L L  HP+      +      +R+   +  R   T 
Sbjct: 888  EEPEAPLPAMALGEHVVMDYGSLSLSLKAHPLSLLRDGLPGITPAERLAQTRDGR-RLTT 946

Query: 1011 AGMIIALRVMKNKKGDKMG--FITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEV 1068
            AG+++    ++ + G   G  FITL+D +G     +  DAF + +  + T  ++   G V
Sbjct: 947  AGLVL----VRQRPGSAEGVVFITLEDETGIANLVVMPDAFETFRRPIMTARLMAATGRV 1002

Query: 1069 SNDDFSGGLRLRIKRVMSM 1087
             N +  G + LR++ ++ +
Sbjct: 1003 QNHE--GVVHLRVESLIDL 1019