Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1154 a.a., DNA polymerase III subunit alpha from Alteromonas macleodii MIT1002

 Score = 1338 bits (3464), Expect = 0.0
 Identities = 678/1176 (57%), Positives = 869/1176 (73%), Gaps = 27/1176 (2%)

Query: 1    MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG 60
            M + F+HLR+H+++S++DGL ++KP++  +  + MPAVA+TDQ NMC LVKFY  A   G
Sbjct: 1    MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLG 60

Query: 61   IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV 120
            IKPI G D W++N+   +   R++L+AMN  GY+N+T LIS+ ++ G  +   +I++EW+
Sbjct: 61   IKPIIGTDFWVTNEVFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSHRAVIDQEWL 120

Query: 121  AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEH 180
            AE SEG+I LS A+ G++G+ L+  N +  +   + +   FPDRFYLE+ RT R  +E++
Sbjct: 121  AEHSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELIRTGRQGEEDY 180

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            LH AV LA++ G P+VATN+V FI +E F+AHE RVCI +G  LDD RR K YS++QYL+
Sbjct: 181  LHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRPKRYSDQQYLR 240

Query: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL 300
            +AEEM ELFSD+PEA+EN+VEIAKRCN+ V+L ++FLP FP   GMT +++  KVS +GL
Sbjct: 241  TAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPT-GGMTTEDFLVKVSEEGL 299

Query: 301  EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV 360
            EERL  L P +  E  +AKR  Y DRL  EL++I QMGFPGYFLIVM+FIQW+K+NG+PV
Sbjct: 300  EERLEFLFPDE--EVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPV 357

Query: 361  GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 420
            GPGRGSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD RD VI++V
Sbjct: 358  GPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHV 417

Query: 421  AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE 480
            AE YGR AVSQIITFG+MAAKAV+RDV RV G  YG  DR+SK+IP + GMTLEKA++ E
Sbjct: 418  AELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAE 477

Query: 481  EILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV 540
              L +  + DEE  ++ DMAR LEGV RN GKHAGGVVIAPT +TDFSP+YCD+EG   V
Sbjct: 478  PQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGKNPV 537

Query: 541  TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYT 600
            TQFDK+DVE AGLVKFDFLGLRTLTII WA+  I   +       +DI+ IPL+D  ++ 
Sbjct: 538  TQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGK----NVDVDISAIPLEDPKSFR 593

Query: 601  LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR 660
             LQ AETTAVFQLESRGMKELIK+LKPDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR
Sbjct: 594  TLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 653

Query: 661  AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE 720
             E++YP ++YQ+E LK +L PTYGIILYQEQVMQIAQ MAGY+LGGAD+LRRAMGKKKPE
Sbjct: 654  EEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPE 713

Query: 721  EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 780
            EMAKQRG F EG   NNID DLA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK HY
Sbjct: 714  EMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHY 773

Query: 781  PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI 840
            PA FMAAV+SADM NTDK+VTL++E   M + +  PD+NA ++KFTV+ EGRI+YG+GAI
Sbjct: 774  PAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSEGRIVYGIGAI 833

Query: 841  KGVGEGPVEAITEARQ-DGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDE 899
            KGVGEGP+EAI EAR+  G FKDLFDFCA++D+KR+NKR L+ L+ +GA+D LGP+    
Sbjct: 834  KGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMDNLGPH---- 889

Query: 900  PKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAK 959
                       RA L+ ++ EA+ AA Q A+    G +D+F GL   E  DV        
Sbjct: 890  -----------RASLMASLPEALAAAGQHAKAESFGQSDMF-GLLTTEPEDVKQAFADVP 937

Query: 960  ELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGMIIAL 1017
            E   K  L+GEKDTLGLYLTGHPI++Y  E+R +   R++DLKP    Q  +  G+++ +
Sbjct: 938  EWPEKVWLEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGV 997

Query: 1018 RVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGL 1077
            RVM NK+G +   +TLDD+S RI+   F D +   +S+L+TD +++++G+VS DDFSGG 
Sbjct: 998  RVMTNKRGRRWAIVTLDDKSARIDVRFFPDMYEQFESVLETDRILLIKGQVSFDDFSGGN 1057

Query: 1078 RLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKR-HRGACPVTMEYTGSD 1136
             +  + VM +  AR   A +L L + T+ L+  ++  +  +L+  + G+CPV +  T  D
Sbjct: 1058 TITARDVMDIVQAREKNARALALNIDTQLLEPKKMSQMQSILQAFNGGSCPVQLAVTHPD 1117

Query: 1137 AKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
            A+ +L  G  W + P D L+  L+   G   V + Y
Sbjct: 1118 AEVILACGARWYVTPEDQLLHDLKQCLGDKAVSILY 1153