Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1029 a.a., Error-prone DNA polymerase from Alteromonas macleodii MIT1002

 Score =  317 bits (813), Expect = 2e-90
 Identities = 250/877 (28%), Positives = 414/877 (47%), Gaps = 72/877 (8%)

Query: 5   FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNA--MGAGIK 62
           +  L   + YS + G      LV T   +   A+A+TD+ ++  +V+ +      G  I 
Sbjct: 3   YSELFCQSNYSFLCGASSPAELVTTASFLGYDALAITDECSVAGVVRAFDEIKHQGLPIT 62

Query: 63  PICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAE 122
            I G+         D+ LS + LL  N   Y  L  +I+       +    + E +    
Sbjct: 63  LIVGSYFVF-----DDTLSFV-LLCPNKAAYSELCRIITNARRRSDKGEYQLAEWDLRTI 116

Query: 123 ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPD-RFYLEVQRTNRPNDEEHL 181
                I L + KE +             +    EW+Q  P    Y+  QR     D    
Sbjct: 117 RHCKFIWLPSGKEAK-------------DKHWAEWLQKHPSIDAYIGAQRLLDGRDHHRF 163

Query: 182 HAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKS 241
                L      P++A   V     +          I    ++D   R    + E+ L++
Sbjct: 164 AHYNHLQSAYPFPVIACTGVLMHHADRLPLQHVLHAINVHTSVDKIGRDALSNAERSLRT 223

Query: 242 AEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLE 301
            +++ +L+ +   A  N++  A   ++E +L  H+ P   +P+G T   Y R    + +E
Sbjct: 224 VQKIKKLYPEKWIANTNALAHAFTFSLE-ELRYHY-PAELVPEGYTPTSYLR----ERVE 277

Query: 302 ERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVG 361
             + V  P+  T D           +  EL +I +  +  +FL + D +Q+AK   + + 
Sbjct: 278 AGIKVRFPEGITPDIR-------QTIEKELTLIAEQEYEYFFLTIYDIVQFAKRQRI-LY 329

Query: 362 PGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVA 421
            GRGS A S+V Y  +IT +DP +  +LFERF++ ER   PD DVDF    R+ VI+Y+ 
Sbjct: 330 QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHQRREEVIQYIY 389

Query: 422 EKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLAD-------RLSKMIPFEVGMTLE 474
           +KYGR   +   T      K+  +DV +  G S    D       R   +IP++  +   
Sbjct: 390 QKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVKQINRRDSVIPWKSQLAGL 449

Query: 475 KAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDE 534
               +E  ++  I + E           L G  R++ +H GG VI+   L D  P+    
Sbjct: 450 GLNPEEPRVQQLITLTE----------ALLGTPRHLSQHVGGFVISAGPLYDLVPVENAA 499

Query: 535 EGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLD--IAFIP 592
                + Q+DKDD+E  GL+K D L L  L+ I  A   IN+      + P++  I FI 
Sbjct: 500 MEERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFSLINK------QYPVETSIPFIT 553

Query: 593 L--DDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMV 650
              DDK  + ++ +A+T  VFQ+ESR    ++ +LKP    DL+  +A+ RPGP+Q  MV
Sbjct: 554 KLGDDKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVRPGPIQGDMV 613

Query: 651 DDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADML 710
             ++ R+HG   ++YP  D     ++ VL+ T G+ ++QEQV+Q+A V AG++ G AD L
Sbjct: 614 HPYLIRRHGNETISYPSKD-----VEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQL 668

Query: 711 RRAMGK-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLV 769
           RRAM   KK   + + R   I+G      D+  A N+F+ ++ FAGYGF +SHSA++ ++
Sbjct: 669 RRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLFEQIKGFAGYGFPESHSASFAVL 728

Query: 770 SYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVND 829
           +Y + WLK ++P  F  A+L++          L+++ +   +R++AP VN S+ + ++  
Sbjct: 729 AYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKRHHIRVEAPCVNQSDVEHSLVV 788

Query: 830 EGRIIY---GLGAIKGVGEGPVEAITEARQDGPFKDL 863
           +G+  Y   GL  IKG+ E   + I E R D  + D+
Sbjct: 789 QGQEKYIQLGLKLIKGLSEASSQLIVENRSDKGYTDV 825