Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  369 bits (947), Expect = e-106
 Identities = 290/1082 (26%), Positives = 490/1082 (45%), Gaps = 89/1082 (8%)

Query: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63
            S+  L++ T +S + G    + L +T   + + A+ V D+N++  +V+  + +    I+ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRL 61

Query: 64   ICGADLWLSNKDPDNPLSRISLLAM--NGVGYRNLTELISRGFIDGQRNGSIIIEREWVA 121
            + G  L L++         +SLL    +   Y  LT LI+ G   G +N  I+   + +A
Sbjct: 62   VVGCRLDLTDG--------MSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIA 113

Query: 122  EASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHL 181
             +            G IG+ +            +   + F DR Y+ +    R ND+  L
Sbjct: 114  YS-----------RGMIGVLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLRRRQNDQMRL 162

Query: 182  HAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKS 241
            H    LA +     V TNDV F +    +  +   CI     +DD    +    ++YLK 
Sbjct: 163  HEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKP 222

Query: 242  AEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLE 301
             EEM  LFS   EAL  ++EI +RC   ++   +  P   I  G           ++   
Sbjct: 223  PEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAP 282

Query: 302  ERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVG 361
            +R    LP+D  +            +  ELD+I  M +  YFL V   +++A++ G+ + 
Sbjct: 283  DRYPEGLPQDVLKT-----------VRHELDLIRTMKYAPYFLTVFSIVRFARSQGI-LC 330

Query: 362  PGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVA 421
             GRGS A S V Y+  IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI+++ 
Sbjct: 331  QGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIY 390

Query: 422  EKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEE 481
            + Y ++  +   T     AK  IRDV    GK+ GL + + K +   +    E+  ++  
Sbjct: 391  KTYTKDKAALCATVTRYRAKGAIRDV----GKALGLPEDVIKALSSGMWSWSEEVPDRNI 446

Query: 482  ILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVT 541
               +    D   A    +A++L G  R++G+H GG V+   +L D  PI         + 
Sbjct: 447  RELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQII 506

Query: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTL 601
            ++DKDDVEA   +K D L L  LT +  A   I   +     + LD++ I  +D  TY +
Sbjct: 507  EWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKG----QQLDLSNIEQEDAATYAM 562

Query: 602  LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA 661
            ++KA+T   FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+ G+ 
Sbjct: 563  IRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKE 622

Query: 662  ELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPE 720
             + YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K   
Sbjct: 623  PVEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 721  EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY 780
             +++ +   + G   N    + A   F  +E F  YGF +SH+A++ L++Y + ++K HY
Sbjct: 678  GVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHY 737

Query: 781  PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV-----NDEGRIIY 835
            P  F AA+L++          ++ +     + +    VN S +  T+     +D   +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHAVRL 797

Query: 836  GLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKR---INKRTLDGLIRSGALDRL 892
            G   +KG+       I  AR + PF  + D   R  +     +     D  + S  L+R 
Sbjct: 798  GFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEALVQLAEADAFLPSLKLER- 856

Query: 893  GPYFHDEPKAYQANIDRNRAVLLTAME-EAIKAAEQTARTHDSGHADLFGGLFVEEDADV 951
                 D   A +A  D    +   A E EA   AEQ                   ++ +V
Sbjct: 857  ----RDALWAIKALRDEPLPLFAAAAEREATAIAEQ-------------------QEPEV 893

Query: 952  YGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTV- 1010
                   +++T    +  +    GL L  HP+     ++         +   ARD + V 
Sbjct: 894  -----ALRQMTDGHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVY 948

Query: 1011 -AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVS 1069
             AG+++  +   + KG  + FIT++D +G     ++   F   +S++   +M+ + G + 
Sbjct: 949  TAGLVLVRQKPGSAKG--VMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQ 1006

Query: 1070 ND 1071
             +
Sbjct: 1007 RE 1008