Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1091 a.a., DNA polymerase III subunit alpha from Agrobacterium fabrum C58

 Score =  372 bits (954), Expect = e-106
 Identities = 301/1093 (27%), Positives = 502/1093 (45%), Gaps = 107/1093 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L++ T +S + G      L +    + + A+ V D+N++ ++ + Y+ A   G++ +
Sbjct: 6    YAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNHGVRLV 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             G  L     D D+ LS + +  M+   Y  L  L+S G   G + G   +  + +    
Sbjct: 66   IGCRL-----DLDDDLS-VLVYPMDRAAYGRLCRLLSVGKKRGGK-GKCRLSWDDLVAYG 118

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
            EGLI++  A   +   AL            +     F DR Y+ +    RPND+  L   
Sbjct: 119  EGLIVVLLADLADDLCALR----------LRRLKAAFADRAYMALSLRRRPNDQMRLFEL 168

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
              +A   G P V TNDV F   E     +   CI     +D+    +    ++Y+K  EE
Sbjct: 169  SGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGFRRERHADRYMKPPEE 228

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M  LF+  PEAL  S+EIAKRC   +K   +  P      G+T  +   K+ ++ +  R 
Sbjct: 229  MHRLFARYPEALSRSLEIAKRCKFSLKELVYQYPEERSLPGLTAQQALEKMVWEAVPGRY 288

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
               LP+   +            L+ ELD++ ++ +  YFL V   +++A++  + +  GR
Sbjct: 289  PNGLPEKVEK-----------ALHHELDVVGRLQYASYFLTVNAIVRYARSKDI-LCQGR 336

Query: 365  GSGAGSLVAYVQKITDLDP-LEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEK 423
            GS A S++ +V  IT +DP L  +L+FERF++  R   PD DVDF    R+ VI++V + 
Sbjct: 337  GSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVDFEHQRREEVIQWVYDT 396

Query: 424  YGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEIL 483
            YGR+  +          +  +RDV    GK  GL + L+K++  +V    E   E++   
Sbjct: 397  YGRDKAALCSVVTRYRGRGALRDV----GKVLGLPEDLTKLLSSQVWRWSEGVGEKQVKE 452

Query: 484  RDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQF 543
             +    D      +++A +L G  R+  +H GG V++  +L +  PI         + ++
Sbjct: 453  LNLNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLSHDRLDELVPIEPAAMNDRQIIEW 512

Query: 544  DKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQ 603
            DKDD++    +K D L L  L+ +      +    A+  E+  D+A +P DD  T+ ++Q
Sbjct: 513  DKDDIDIVKFMKMDCLALGMLSCMKRGFDLL---EARTGEK-YDLAAMPPDDPATFAMIQ 568

Query: 604  KAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 663
            KA+T   FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+ G+  +
Sbjct: 569  KADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAIVRPGPIQGDMVHPYLRRRQGKEPV 628

Query: 664  AYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEM 722
                  Y+   L+ +L  T G+ L+QEQ M+IA   A +T   AD LRRAM   K    +
Sbjct: 629  L-----YEKPQLENILKKTLGVPLFQEQAMRIAMDCADFTADEADQLRRAMATFKNVGTI 683

Query: 723  AKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPA 782
            +K +   + G   N  D + A  IF  +E F  YGF +SH+A++ L++Y ++WLK H+P 
Sbjct: 684  SKFKEKLVTGMVANGYDKEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWLKCHHPD 743

Query: 783  PFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV------NDEGR---- 832
             F  A+L++          ++ + R   + +    VN S F  T+      ND+G     
Sbjct: 744  IFCTAILNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCTLEPTGKKNDKGEERFA 803

Query: 833  IIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKR---INKRTLDGLIRSGAL 889
            +  GL  +KG+       I  ARQD PF  + D   R  +     +     D  + S  L
Sbjct: 804  VRLGLRMVKGLSNDHAADIVAARQDRPFASVDDLWRRAGVPAAALVCLAEADAFLPSLRL 863

Query: 890  DRLGPYF-----HDEP-KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGL 943
             R    +      DEP   + A   R  AV+    E ++     T            GG 
Sbjct: 864  ARREALWAIKALRDEPLPLFAAAAIRENAVIEELQEPSVALRPMTD-----------GGE 912

Query: 944  FVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKP 1003
             V++    YG+                   +GL L  HP+       R  +R+RI+    
Sbjct: 913  VVQD----YGH-------------------VGLTLREHPMTFLR---RDLSRRRIVTCAE 946

Query: 1004 A---RDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQT 1058
            A   RD      AG+++  +   + KG  + F+TL+D +G   A L+   F   + ++ +
Sbjct: 947  AVRVRDGTWLETAGLVLVRQRPGSAKG--VIFMTLEDETGIANAVLWVKTFEKYRRVVLS 1004

Query: 1059 DAMVVVEGEVSND 1071
              MV + G++  +
Sbjct: 1005 AGMVGIYGKIQRE 1017