Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  808 bits (2088), Expect = 0.0
 Identities = 475/1134 (41%), Positives = 661/1134 (58%), Gaps = 84/1134 (7%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+ YSL++G + +K ++   VG   PA+A+TD NN+   ++F + A   G++PI
Sbjct: 20   FVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEGLQPI 79

Query: 65   CGADLWLSNKDPDNP----------LSRISLLAMNGVGYRNLTELISRGFIDGQRNG-SI 113
             G  L +  +D              L  I LLA N  GY  L +L+SR ++DG+    S+
Sbjct: 80   IGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGGSHSV 139

Query: 114  IIEREWVAEASE-GLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRT 172
             I R W+ EAS  GLI L+ A  G + +AL  G+  +A+        +F DR Y+E+QR 
Sbjct: 140  HITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIELQRQ 199

Query: 173  NRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232
            +   D  H    + LA +   PLVATN+  F  K D+EAH+  + +     + D  R + 
Sbjct: 200  SG-YDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSRFR- 257

Query: 233  YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNF------PIPDGM 286
             + + YLKS +EM  LF+DLPEALEN+VEIA RC+  +K     LP F      P     
Sbjct: 258  LTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAAER 317

Query: 287  TIDEYFRKVSFDGLEERLSVL--LPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFL 344
               E  R+ + +GL++RLS L   P  T +DY        +RL+FEL +I +M FPGYFL
Sbjct: 318  AETEELRRQAVEGLDQRLSALGMAPGYTEQDYR-------ERLDFELGVISRMKFPGYFL 370

Query: 345  IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDF 404
            IV DFI+WAK   +PVGPGRGSGAGSLVAY   ITD+DPL + LLFERFLNPERVSMPDF
Sbjct: 371  IVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDF 430

Query: 405  DVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKM 464
            D+DFC D R+ VI YV  KYGR  V+QIITFGS+ A+A +RDV RV    YG  D++ K+
Sbjct: 431  DIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 490

Query: 465  IPFEVG--MTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPT 522
            +P        L KA E+E  L++    +   A + D+A+K+EG+ R+   HA G+VI   
Sbjct: 491  VPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDR 550

Query: 523  KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582
             L+   P+Y D      VTQF+   VE+AGLVKFDFLGL+TLT++  A+  + +   KV 
Sbjct: 551  PLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKV- 609

Query: 583  EEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642
                D+A IPL+D  TY +L + ET  VFQ+ES GM++ +  ++PDC+ED+IALVAL+RP
Sbjct: 610  ----DLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRP 665

Query: 643  GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702
            GP+++  +  +  RKHG  EL   H    +     +L  T G+I+YQEQVMQIAQV++GY
Sbjct: 666  GPMEN--IPVYNARKHGEEELESIHPTIDH-----LLKETQGVIVYQEQVMQIAQVLSGY 718

Query: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762
            +LG AD+LRRAMGKK  EEM +QR  F++G   N +    A  IFDL+ KFA YGFNKSH
Sbjct: 719  SLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSH 778

Query: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822
            +AAY +VSYQTA++KAHYP  F+AA ++ DM NT+K+    ++   + + + AP V  S 
Sbjct: 779  AAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTS- 837

Query: 823  FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882
            F+     E RI Y L AIKGVGEG VE I + R + PF  L DFC R+D K+IN+R L+ 
Sbjct: 838  FRQFETGENRIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLES 897

Query: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942
            LI +GA D  G               R+RA L+  ++  I  A+        G +D+FG 
Sbjct: 898  LINAGAFDCFG---------------RDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGS 942

Query: 943  LFVEEDADVYGNHRKAKELTL--------KERLKGEKDTLGLYLTGHPIDEYEGEIRRFA 994
                      G     ++L L         E+L  E   LG YLT HP+D Y   + +  
Sbjct: 943  ----------GGGTGPEKLILPAFQSWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLR 992

Query: 995  RQRIIDLKPA--RDTQTV---AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAF 1049
             Q   D   A  +   TV   AG +   +  K + G+KMG +T  D SG+ EA LF++  
Sbjct: 993  VQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGL 1052

Query: 1050 HSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRLKVK 1103
               + LL+    +V+   V  ++   G+ LRI+   S+E+    + ++LR+ V+
Sbjct: 1053 AQFRDLLEVGKSLVI--NVQAEERPEGIGLRIQTAQSLEEKSVQMQKALRVYVR 1104