Pairwise Alignments

Query, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  783 bits (2022), Expect = 0.0
 Identities = 425/1022 (41%), Positives = 638/1022 (62%), Gaps = 12/1022 (1%)

Query: 3    FNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVS 62
            FNLS  A+R R I LFL++L+A  GTL++ KLG++EDPPFT K M I T WPGATAQE+ 
Sbjct: 6    FNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQ 65

Query: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQ 122
              V E +EK++ E   Y+R  +++RPG +      +D    + + E +YQ RKK  D  +
Sbjct: 66   DLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAK 125

Query: 123  TLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGL 182
             +P  + GP  NDEF      +YAL   G     L   A+ ++ QL  V  V KV ++G 
Sbjct: 126  LMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIGE 185

Query: 183  QDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEE 242
            Q E+I++  S+ +LATLG+    +  AL  QNA+S +G  ET   +V +RV G F  + +
Sbjct: 186  QAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLAK 245

Query: 243  IRNFPIRVGDRTFRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGKAL 302
            IR  P+    R  ++ DVAD+ RG+ DP    +R  G  A+ L + MR+G + L LGKAL
Sbjct: 246  IRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKAL 305

Query: 303  EGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRTGMV 362
            E E A++ + +P GM L KV+DQ   + +SV EF+     AL +V+LV F S+G R G+V
Sbjct: 306  EAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGVV 365

Query: 363  VALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRL 422
            VA A+PL LA+ F  M   G    +I+LG+L+LALGLLVDDAIIA+EMM +KME+GYDR+
Sbjct: 366  VAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425

Query: 423  KAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWVAAVVF 482
            KA+++AW+ TA PML+GTL+TA GF+P   AQS+ GEYT ++F +V IAL+ASWV AV F
Sbjct: 426  KASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVAF 485

Query: 483  VPYLGEKLLPDLAKI---HAAKHGTDGPDPYGTPFYQRVRRMVEWCVRRRKTVIVLTLLL 539
             PYLG KLLP +  I   HAA         Y T  Y R R ++ W +  +  V    +  
Sbjct: 486  TPYLGVKLLPRIKTIEGGHAA--------IYNTRHYNRFRALLGWVIAHKWLVAGTVVST 537

Query: 540  FIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDNYV 599
            F+ +V     V +QFFP S R E++V+L++  G S+  T     ++E+ L++        
Sbjct: 538  FVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVT 597

Query: 600  AYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQF-PDLRSRVT 658
             Y+G G PRF+L +  +LP  SFA+ VVL +    RE+L+  L +  +E   P  + RVT
Sbjct: 598  TYIGQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVT 657

Query: 659  RLENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNID 718
            +L  GP   YPV +RV G    ++R +A +V   ++ +P +  V+ DW      ++ +++
Sbjct: 658  QLVFGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLN 717

Query: 719  QDRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVP 778
            QDR +++G+++A++S+ LQ  LTG  ++  RED   ++++ R     R + + + +  + 
Sbjct: 718  QDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLV 777

Query: 779  TDNGKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPATLVQQILPTLEGVR 838
              NG+ V +SQI  +    E+ I+  R+R PT+T+R DI    QP  +   I   L+ + 
Sbjct: 778  GSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIV 837

Query: 839  AELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLG 898
             +LP GY +++ G++E+SA+   ++   +P+ I + L +++LQ+RS S   MVFLT+PLG
Sbjct: 838  TQLPAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLG 897

Query: 899  LIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIEATV 958
            LIGV   LL+F QPFG  A++G IALSG++MRN++IL+ QI+ +   GLAP+ A++EATV
Sbjct: 898  LIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATV 957

Query: 959  RRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVKP 1018
            +R RP++LTALAA+LA IPL+ SVF+G +A  ++GG  V T +TL+FLPA+Y+ WF+++P
Sbjct: 958  QRARPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRP 1017

Query: 1019 QA 1020
             +
Sbjct: 1018 NS 1019