Pairwise Alignments

Query, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

Subject, 1021 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score = 1748 bits (4528), Expect = 0.0
 Identities = 883/1019 (86%), Positives = 962/1019 (94%), Gaps = 2/1019 (0%)

Query: 1    MGFNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQE 60
            MGFNLS WALRNRQIVLFLMILLA +G +SY+KLGQSEDPPFTFKAMVI+T WPGA+A+E
Sbjct: 1    MGFNLSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEE 60

Query: 61   VSRQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDI 120
            V+RQVTERIEKKLMETGEYERIVSFSRPGESQVTF+ARDS+HS  IPELWYQ+RKK++DI
Sbjct: 61   VARQVTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKDIPELWYQIRKKVADI 120

Query: 121  RQTLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELL 180
            R TLPP+IQGPFFNDEFGTTFGNIYALTG+GFDYAVLKDYADRIQIQLQRV DVGKV+L+
Sbjct: 121  RHTLPPEIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLI 180

Query: 181  GLQDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTV 240
            GLQDEK+WIELSNLKLATLG+PL AVQ+ALQEQNAVSTAGFFETPSER+QLRVSG F +V
Sbjct: 181  GLQDEKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSV 240

Query: 241  EEIRNFPIRVGDRTFRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGK 300
            E+IR FPIRVGDRTFRIGDVA++HRGFNDPPAPRMR+MG DAIGLAV+M+DGGDILVLGK
Sbjct: 241  EQIRQFPIRVGDRTFRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKDGGDILVLGK 300

Query: 301  ALEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRTG 360
            ALEGEF RL  NLPAGM LRKVSDQPAAVK  VGEFVQVL EAL IVLLVSFFSLG+RTG
Sbjct: 301  ALEGEFERLAHNLPAGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLGLRTG 360

Query: 361  MVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYD 420
            +VVALAIPLVLAMTFA M+Y GIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYD
Sbjct: 361  LVVALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYD 420

Query: 421  RLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWVAAV 480
            RLKAAS+AWTSTAFPMLTGTLITAAGFLPIATA SSTGEYTRSIFQVVTIALL SWVAAV
Sbjct: 421  RLKAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVTIALLTSWVAAV 480

Query: 481  VFVPYLGEKLLPDLAKIHAAKHGTDG--PDPYGTPFYQRVRRMVEWCVRRRKTVIVLTLL 538
            VFVPYLGE+LLPDLAK+HAA+HG DG  PDPY TPFYQRVRR+VEWCVRRRKTVI+LT+ 
Sbjct: 481  VFVPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRLVEWCVRRRKTVILLTIA 540

Query: 539  LFIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDNY 598
             F+GS+ LFRFVPQQFFPASGR ELMVDLKLAEGASL+NTA++VK+LEALLK+  GIDNY
Sbjct: 541  AFVGSILLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVKQLEALLKQQDGIDNY 600

Query: 599  VAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQFPDLRSRVT 658
            VAYVGTGSPRFYLPLDQQLPAASFAQFVVLAK++E+RE LR+WLI T+++QFPDLR+RVT
Sbjct: 601  VAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLISTVDQQFPDLRARVT 660

Query: 659  RLENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNID 718
            RLENGPPVGYPVQFRVTGEHIE+ RALAR+VA KVRENPHV NVHLDWEEPSK V+L ID
Sbjct: 661  RLENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVHLDWEEPSKAVFLEID 720

Query: 719  QDRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVP 778
            QDRARALGVST++L+ FLQSSL G++VSQYREDNELIEILLRGT+ ER+EL+ L SLA+P
Sbjct: 721  QDRARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTLQERSELANLGSLALP 780

Query: 779  TDNGKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPATLVQQILPTLEGVR 838
            TDNG+SVALSQ+ATLEYGFEEGIIWHRNRLPTVT+RADIY +EQPATLV+QILPTL+ +R
Sbjct: 781  TDNGQSVALSQVATLEYGFEEGIIWHRNRLPTVTVRADIYDQEQPATLVKQILPTLQEIR 840

Query: 839  AELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLG 898
            A+LPDGYLL+VGGTVEDS RGQ SV AG+PLFIVVVL+LLM+QLRSFSRT MVFLTAPLG
Sbjct: 841  AKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLMIQLRSFSRTVMVFLTAPLG 900

Query: 899  LIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIEATV 958
            LIGVTLFLLVFRQPFGFVAMLGTIAL+GMIMRNSVILVDQIEQDI AG+  WQAIIEATV
Sbjct: 901  LIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQIEQDIAAGMERWQAIIEATV 960

Query: 959  RRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVK 1017
            RRFRPIVLTALAAVLAMIPLSRSVF+GPMAVAIMGGLIVAT LTLLFLPALYAAWFRVK
Sbjct: 961  RRFRPIVLTALAAVLAMIPLSRSVFYGPMAVAIMGGLIVATVLTLLFLPALYAAWFRVK 1019