Pairwise Alignments

Query, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

Subject, 1053 a.a., Probable transmembrane drug efflux protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1000 bits (2586), Expect = 0.0
 Identities = 534/1039 (51%), Positives = 718/1039 (69%), Gaps = 26/1039 (2%)

Query: 3    FNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVS 62
            FNLS+WAL ++    +LMI+L V+G + Y +LGQ EDPPFTF+AMV++  WPGATA++V+
Sbjct: 20   FNLSQWALDHQAFTRYLMIVLMVLGVVGYFQLGQDEDPPFTFRAMVVRAYWPGATAEQVA 79

Query: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQ 122
             QV +RIEK L E    ++I S+S+PGE+ + F  +DS    ++ ++WY  RKK+ D+R 
Sbjct: 80   EQVADRIEKTLQEVPYADKIRSYSKPGETLIIFQLKDSSPPQEVQQIWYTARKKVGDMRG 139

Query: 123  TLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGL 182
            TLP  + GPFFNDEFG  +G IYAL G+GF  A  K  AD ++ +L RV DV KVEL G+
Sbjct: 140  TLPQGVVGPFFNDEFGDVYGVIYALQGEGFSPADKKQVADDVRQRLLRVKDVRKVELFGV 199

Query: 183  QDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEE 242
            QDEK++IE+S  +LATLGL L  V  AL +QNAV +AG  +TP + VQ+RV+G F +VE+
Sbjct: 200  QDEKLYIEISQKRLATLGLNLQQVLDALGQQNAVESAGSVQTPQDVVQVRVAGAFNSVEQ 259

Query: 243  IRNFPIRVGDRT-FRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGKA 301
            +R  PIR  + T  R+GD+A I  G+ DPP   +R+ G D+I L ++M  GGDI+ LGKA
Sbjct: 260  LRAMPIRAANGTQIRLGDIAKIGLGYVDPPQVLVRHEGKDSIALGISMAKGGDIIALGKA 319

Query: 302  LEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLG----- 356
            L+   A ++  LPAGM L +V DQP+AV  SV EFV+VL EA+ IVL VSF +LG     
Sbjct: 320  LKTTVAGIEATLPAGMTLAQVQDQPSAVTNSVNEFVKVLIEAVVIVLAVSFLALGLHRRP 379

Query: 357  -----------VRTGMVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAI 405
                       +R G+VV + IPLVLA+TF  M+Y GIGLHKISLG+L++ALGLLVDDAI
Sbjct: 380  GGRGLKRYVLDMRPGLVVFITIPLVLAITFLAMHYWGIGLHKISLGSLIIALGLLVDDAI 439

Query: 406  IAVEMMAIKMEQGYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIF 465
            IAVEMM  K+E+GYD ++AA+F W +TA PMLTGTLITAAGFLPI  A S+TGEYT +IF
Sbjct: 440  IAVEMMVRKLEEGYDMMRAATFTWDATAMPMLTGTLITAAGFLPIGLANSTTGEYTFAIF 499

Query: 466  QVVTIALLASWVAAVVFVPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWC 525
             V  +AL+ SWV AV+FVPYLG  LL    K HA     +  + +  PFY R R +V+WC
Sbjct: 500  AVTVLALVISWVVAVLFVPYLGVVLLK--VKPHAE---GEPHEVFDGPFYVRFRAVVDWC 554

Query: 526  VRRRKTVIVLTLLLFIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRL 585
            V+ R   I  T+L F+  +A    V QQFFP S R E++VD+ L EG+S+    +  +R+
Sbjct: 555  VQHRWLTIGATILTFVLGIAGMGSVQQQFFPDSSRPEILVDIWLPEGSSMPAMDEVTRRV 614

Query: 586  EALLKEHAGIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQT 645
            E  L +  G+     +VG+G PRFYLPLDQ  P  + +Q +VL + ++ RE LR  L   
Sbjct: 615  ENRLAKEEGVRGVTTWVGSGVPRFYLPLDQIFPQTNVSQMIVLPQDLKTREHLRKALPGL 674

Query: 646  LNEQFPDLRSRVTRLENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLD 705
            L  +FP++R RV  L NGPPV YPVQFRV G   + +R LA +V + +RENP++  V+ +
Sbjct: 675  LATEFPEVRGRVKLLPNGPPVPYPVQFRVVGSDPQVLRGLADEVKLAMRENPNMRGVNDN 734

Query: 706  WEEPSKIVYLNIDQDRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHE 765
            W E  K + L +DQ +ARALGVS+ ++++  ++ L+G++V QYRE ++LI+I+LR  + E
Sbjct: 735  WNESVKRLRLEVDQAKARALGVSSQSIAQASRTLLSGTTVGQYREGDKLIDIVLRQPLEE 794

Query: 766  RTELSLLPSLAVPTDNGKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPAT 825
            R  ++ L +  +PT +G+++ L QIA   + +E G++W  NR   +T++ D+    Q AT
Sbjct: 795  RDAITSLANAYLPTASGQAIPLLQIARPVFDWEPGVLWRENRDYAITVQGDVVEGLQGAT 854

Query: 826  LVQQILPTL----EGVRAELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQ 881
            +  Q+ P L    +G  ++    Y ++V G VE+S++G  S+  GVPL + +V TLLMLQ
Sbjct: 855  VTAQLQPKLKAISDGWASKGLGAYHIEVAGAVEESSKGSASIVVGVPLMLFIVFTLLMLQ 914

Query: 882  LRSFSRTAMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQ 941
            L+SFSR+ +VFLT PLG+ GV   LL+  +PFGFVA+LG IAL GMI RNSVIL+DQIEQ
Sbjct: 915  LQSFSRSMLVFLTGPLGMAGVAGALLLLNRPFGFVALLGVIALMGMIQRNSVILIDQIEQ 974

Query: 942  DIKAGLAPWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATAL 1001
            D   G+  W AI+EA VRR RPIVLTA AAVLAMIPLSRSVF+GPMAVAIMGGLIVAT L
Sbjct: 975  DRARGVPAWDAIVEAAVRRMRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVL 1034

Query: 1002 TLLFLPALYAAWFRVKPQA 1020
            TLL LPA+YAAWFRV+  A
Sbjct: 1035 TLLALPAMYAAWFRVRRPA 1053