Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  196 bits (497), Expect = 1e-54
 Identities = 122/338 (36%), Positives = 178/338 (52%), Gaps = 7/338 (2%)

Query: 18  LAGCGHEEAAQTTIRPAMVVQPQPSS-QSMDSYPGEVRARYEPDLAFRIGGKVSKRLVEE 76
           L GC  + AAQ  +R    V    S   +   +  EVRAR E  L FR+ GK+++R  E 
Sbjct: 24  LVGCSPKPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAGKITRRQAEL 83

Query: 77  GERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRSQY 136
           G+ V+A Q LA+LDPQD RL  EA RAQ A A  N  L  A+  RY+ L ++  +S ++ 
Sbjct: 84  GQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELREQNFISGAEL 143

Query: 137 DNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQTVFT 196
           +  E  ++A  A+L+Q +A+     NQA Y  L A   G++     E GQVV AG  V  
Sbjct: 144 ERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQVVQAGTPVVR 203

Query: 197 LATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTFAAR 256
           +A DG R+V+ ++PE      K G PV+V  WS  ++   G++RE++ +AD  +RT++ +
Sbjct: 204 IAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGNE-LQGQVREVAASADAVTRTYSIK 262

Query: 257 VAFTGGKVPAELGQSARVFIQV---DGDIPLSVPLSALSAENGASYVWRVQPDN-TLKRT 312
           VA      P  LG +     Q     G   L +P SAL  E   S VW +     T++  
Sbjct: 263 VAIDAATAP-PLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWVLDKSTMTVRSQ 321

Query: 313 PVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQV 350
            V++         +  G++P   V+AAGVHVL  GQ+V
Sbjct: 322 AVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKV 359