Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 401 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  108 bits (271), Expect = 2e-28
 Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 21/342 (6%)

Query: 24  EEAAQTTIRPAMVVQPQPSSQSMDSY-PGEVRARYEPDLAFRIGGKVSKRLVEEGERVKA 82
           E AA  ++    VV+P  + +  D   PG V+A     +  R  G V + L + G+RV+A
Sbjct: 51  ETAADASVPTVAVVKPTMNGEGNDLVLPGNVQAYNSAAIYARTNGYVRRWLADIGDRVRA 110

Query: 83  NQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRSQYDNSEN- 141
            Q LA LD  D+  Q+ A +A    A AN  L      R+  ++ +  VSR + D     
Sbjct: 111 GQPLAVLDAPDLDQQVAAAQADYQTALANQRLAETTSKRWSAMLAQDAVSRQEADEKAGD 170

Query: 142 ------LYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVV----SAG 191
                 +  A +A +K++KA       Q G+  L AP DGVV  R  ++G +V    +A 
Sbjct: 171 LAARTAVSNAALANVKRLKA-------QQGFTRLAAPFDGVVTSRSAQIGALVVSGNAAA 223

Query: 192 QTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSR 251
           Q +FT++      + + +P+      + G   ++ L   P + F   +   S A D +S 
Sbjct: 224 QPLFTVSDIHRMRIYVRVPQGYSASVRPGMGATLTLPEYPGRSFNATLTSSSGAVDAQSG 283

Query: 252 TFAARVAFTGGKVPAELGQSARVFIQVDG--DIPLSVPLSALSAENGASYVWRVQPDNTL 309
               ++         + G  A+V  +V       +++P SA+   N    V  V  DN +
Sbjct: 284 AVLVQLQAENPDGALKPGAFAQVSFKVGAGQGNGMTLPGSAILYSNNGPSVAVVGADNRI 343

Query: 310 KRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVR 351
              PV I      TV +  GLSP D ++      +  G  V+
Sbjct: 344 TMKPVAIARDEGATVQIASGLSPNDRIVDTPPDAIRTGDTVK 385