Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  168 bits (426), Expect = 2e-46
 Identities = 126/348 (36%), Positives = 168/348 (48%), Gaps = 14/348 (4%)

Query: 10  LPVSLVFLLAGCGHEEAAQT---TIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIG 66
           LP++LV     CG     +    T      V  Q +S    S+ G V AR + DL FR+ 
Sbjct: 13  LPLALV----ACGDSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVS 68

Query: 67  GKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLM 126
           GK+ +RLV+ G+ VK  Q L  +DP D+ LQ  A +  V  A A       +  RY+ L+
Sbjct: 69  GKILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLV 128

Query: 127 DRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQ 186
               VS S YD  +    A  A+L   +A+ DVA N   YAVL A  DGVV   + E GQ
Sbjct: 129 ADGAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQ 188

Query: 187 VVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAA 246
           VVSAGQ V  LA  G+RE ++ LPE    R   G      L+ +P Q    ++R LS AA
Sbjct: 189 VVSAGQAVVRLARAGQREAVVYLPET--LRPAPGSTALATLFGKPAQAVPAKLRLLSDAA 246

Query: 247 DPKSRTFAARVAFTGGKVPAELGQSARVFI-QVDGDIPL-SVPLSALSAENGASYVWRV- 303
           DP +RTF AR   TG    A LG +  + I   D D     +P+ AL      + VW + 
Sbjct: 247 DPITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIA 306

Query: 304 -QPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQV 350
            QP     R    +    EK V V   L   D ++A G H+L +G +V
Sbjct: 307 GQPAKVSWRAVEVLSVSDEKAV-VKSDLHAGDRIVALGAHLLRDGVEV 353