Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 375 a.a., efflux RND transporter periplasmic adaptor subunit from Paraburkholderia sabiae LMG 24235

 Score =  186 bits (471), Expect = 1e-51
 Identities = 111/351 (31%), Positives = 185/351 (52%), Gaps = 6/351 (1%)

Query: 9   ALPVSLVFLLAGCGHEEAAQTTIRPAMVVQPQPSSQSMD-SYPGEVRARYEPDLAFRIGG 67
           AL ++    LA C ++EAA    RP + V      Q +  S PGEV+ARY   L+FRI G
Sbjct: 15  ALVLASALTLAACHNKEAAAPAPRPVVAVAVHADGQPLAASLPGEVQARYSTPLSFRIAG 74

Query: 68  KVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMD 127
           K+ +R V  G+ V+  Q +A LDP D +    +  AQ+  A+  L   + + DR +    
Sbjct: 75  KIIERRVRLGDVVQNGQIVARLDPADAQKNAASAAAQLDAAQHRLVYAKQQLDRDRAQAR 134

Query: 128 RQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQV 187
             +++++Q + +E+ Y +  A+  Q + +  +A +Q  Y  L A   GV+     + GQ 
Sbjct: 135 ENLIAQTQLEQTEDAYASAAAQRDQAQQQAALAKDQLQYTTLTADHAGVITAEQADTGQN 194

Query: 188 VSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAAD 247
           VS+GQ V+ LA  G+ +V+  +PE      ++G   +V+L + P + F  R+RELSPAAD
Sbjct: 195 VSSGQAVYNLAWSGDVDVVCDVPEGALASLRVGTNATVKLGALPGRTFNARVRELSPAAD 254

Query: 248 PKSRTFAARVAFTGGKVPAELGQSARVFIQVDGDIP----LSVPLSALSAENGASYVWRV 303
           P+SRT+ A++          LG +A +    D         ++P +AL  +     VW V
Sbjct: 255 PQSRTWRAKLTLDHPGTDVRLGMTADIDFAHDSTAAHASLYTLPATALFHDGTQPAVWVV 314

Query: 304 QPDN-TLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRPV 353
           +  N  L+   V++  + E+T+ + +GL+  + V+  GVH +  G++VR V
Sbjct: 315 KSGNDQLELRRVQVSHYAERTIAISQGLNEGERVVWQGVHTVTAGEKVRVV 365