Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 360 a.a., efflux RND transporter periplasmic adaptor subunit from Pectobacterium carotovorum WPP14

 Score =  164 bits (415), Expect = 3e-45
 Identities = 113/355 (31%), Positives = 171/355 (48%), Gaps = 4/355 (1%)

Query: 8   FALPVSLVFLLAGCGHEEAAQTT--IRPAMVVQPQPS-SQSMDSYPGEVRARYEPDLAFR 64
           FA  +     L+GC   + A     +RP       P+ ++   S  GE+R   E  L FR
Sbjct: 6   FAFCLLSAVFLSGCDSADDAPVPPPVRPVKTQLVMPAMNREPVSLTGEIRPHEETVLGFR 65

Query: 65  IGGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKT 124
           + G+V  RLV+ G  VK    +A LD +D   QL + +A +A A +   L ++   R K 
Sbjct: 66  LDGRVLNRLVDVGASVKRGDVIATLDARDSENQLRSAQADLASAASAERLAKSNFSRMKA 125

Query: 125 LMDRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEV 184
           L     ++R Q D ++  + A V+R +  +A    A  +  Y  L A QDGV+    V  
Sbjct: 126 LAPGGAIARVQLDEAQANWDAAVSRRESAQATVKGAQERLSYTQLTAAQDGVITTVSVNP 185

Query: 185 GQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSP 244
           GQVVSAGQ V  LA+   R+ +  +PE+        + + V L S+P  +  GR+R++SP
Sbjct: 186 GQVVSAGQEVVRLASLDGRDAVFDVPERLVNPSLPSRVIRVSLLSEPSVQAEGRVRDISP 245

Query: 245 AADPKSRTFAARVAFTGGKVPAELGQSARVFIQVDGDIPLSVPLSALSAENGASYVWRVQ 304
            ADP +RTF  RV  T       LG S    IQ      + +P SAL+ +     V+ V 
Sbjct: 246 QADPVTRTFRVRVTLTSPPAAMVLGASVNGAIQQSDTAVIELPASALTRQGDKPAVYVVN 305

Query: 305 PD-NTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRPVDRSNR 358
            +  T++  PV I  + +  + V EGL   D V+ AGV  L   +++R  +   R
Sbjct: 306 VETQTVRLQPVTIARYSDTAIFVAEGLKQGDRVVTAGVSKLRPDEKIRLDEEGRR 360