Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  157 bits (396), Expect = 6e-43
 Identities = 106/338 (31%), Positives = 172/338 (50%), Gaps = 4/338 (1%)

Query: 17  LLAGCGH--EEAAQTTIRPAMVVQPQPS-SQSMDSYPGEVRARYEPDLAFRIGGKVSKRL 73
           LL+GC     EAA   +RP   V   PS +  + S  GE+R   E  L FR+ G+V  R 
Sbjct: 37  LLSGCNDAGREAAAAPLRPVRTVTVAPSVAGEVLSQTGEIRPTEETALGFRLDGRVVSRA 96

Query: 74  VEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSR 133
           V+ G  VK  + +A LD +D   QL++ +A +A A A+  L      R K L     ++R
Sbjct: 97  VDVGAVVKQGEVIATLDARDSENQLQSAKADLARAAASERLAEQNLKRMKQLAPNGAIAR 156

Query: 134 SQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQT 193
           SQ D +++ + + V+  +  +A  +   ++ GY  L AP  GV+       GQVV+AGQ 
Sbjct: 157 SQLDEAQSNWSSAVSVRESAQASVNSEQDRLGYTRLSAPIAGVITAVSANPGQVVNAGQE 216

Query: 194 VFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTF 253
           V  LAT   R+ + ++ E+          V+V L S P  +  G +R++SP AD ++RT+
Sbjct: 217 VVRLATFAGRDAVFNVSERLIASGLNDPLVTVSLLSNPAIKTQGHVRDVSPLADAQTRTW 276

Query: 254 AARVAFTGGKVPAELGQSARVFIQVDGDIPLSVPLSALSAENGASYVWRVQPD-NTLKRT 312
             R++         LG + +  + + G   +++P SAL+ + G   V+ V P   TL+  
Sbjct: 277 RVRISLVEPPPEMVLGATVQGEVTLPGGNVINLPASALTRQGGRPAVFVVDPQTQTLRLQ 336

Query: 313 PVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQV 350
           P+ +  + +  + V +GL+  D V  AGV  L  G++V
Sbjct: 337 PITLRHYSDSQMVVADGLAAGDKVATAGVSKLRAGEKV 374