Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 415 a.a., multidrug efflux system, subunit A from Escherichia coli BL21

 Score =  108 bits (270), Expect = 3e-28
 Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 11/314 (3%)

Query: 51  GEVRARYEPDLAFRIGGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEA 110
           G + A     +  R+ G++     +EG++VKA   LAE+DP   ++ L   + Q+A  +A
Sbjct: 80  GTITAANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKA 139

Query: 111 NLSLVRAERDRYKTLMDRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLR 170
            L+  R +  RY+ L+   +VSR + D  + L       +K  +A    A  Q  ++ + 
Sbjct: 140 TLANARRDLARYQQLVKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRIT 199

Query: 171 APQDGVVAKRVVEVGQVVSAGQT--VFTLATDGEREVLISLPEQGFGRF----KIGQPVS 224
           AP DG V  + V+VG  +S+G T  +  +      ++L +LPE          K G+P+ 
Sbjct: 200 APVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLLFTLPESDIATVVQAQKAGKPLV 259

Query: 225 VELWSQPDQR--FTGRIRELSPAADPKSRTFAARVAFTGGKVPAELGQ--SARVFIQVDG 280
           VE W + + +    G +  L    D  + T   +  F          Q  +AR+ +  + 
Sbjct: 260 VEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQ 319

Query: 281 DIPLSVPLSALSAENGASYVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAG 340
           +  + +P +AL   N   +VW +  +N + +  V  G    + V +  G+S  D V+  G
Sbjct: 320 N-AVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDG 378

Query: 341 VHVLHEGQQVRPVD 354
           +  L EG +V  V+
Sbjct: 379 IDRLTEGAKVEVVE 392