Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  185 bits (470), Expect = 1e-51
 Identities = 119/341 (34%), Positives = 174/341 (51%), Gaps = 8/341 (2%)

Query: 15  VFLLAGCGHEEA-AQTTIRPAMVVQPQPSSQSMDSY-PGEVRARYEPDLAFRIGGKVSKR 72
           +F LA C  EE  A+  +R   VV  +       S   GEVRAR + DL+FR+ GK+ +R
Sbjct: 13  IFALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVITGEVRARVQTDLSFRVSGKIIER 72

Query: 73  LVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVS 132
           LV+ G RVK  Q LA +DP++ +  ++   A +  AEA  +  +   DR + L   Q+ S
Sbjct: 73  LVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTFDRQQNLFKTQVTS 132

Query: 133 RSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQ 192
           RS  D ++         ++  +A+ D A +   Y  LRA  DGV+  R VEVGQV  A Q
Sbjct: 133 RSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITARNVEVGQVAQAAQ 192

Query: 193 TVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRT 252
            VFTLA DG R+ +  + E  F    I   V+V L S P Q     +RE+SP  DP + T
Sbjct: 193 LVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPVREISPTIDPDNGT 252

Query: 253 FAARVAFTGG-KVPAELGQSARV-FIQVDGDIPLSVPLSALSAENGASYVWRVQP-DNTL 309
              +V   G   +P     S    F Q+D    + +P SA+++++GA  VW V P  + +
Sbjct: 253 IRVKVGLNGDMTMPLGAPVSGHFRFRQIDA---IELPWSAMASQDGAPAVWLVDPRSSEV 309

Query: 310 KRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQV 350
              PV++  +      V EGL+P D V+  G   L  G++V
Sbjct: 310 AMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKV 350