Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 696 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  332 bits (850), Expect = 4e-95
 Identities = 221/688 (32%), Positives = 345/688 (50%), Gaps = 84/688 (12%)

Query: 8   KILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGRILVLE 67
           +IL+AAS +VV AFA F+ Y D LQ     + +  +I  SG+  A S+ NWL+GRI++ +
Sbjct: 10  RILVAASSLVVAAFAGFSYYIDSLQHRVTTEAVAENIDSSGKQAAQSIANWLNGRIMLTQ 69

Query: 68  SLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTN-GVFTQRPDAKMPDGYDPRQRPW 126
           ++   +A           ++    T+ F  TY G    G FT  P   +P+GYDPR+RPW
Sbjct: 70  TVAATLAKLPDDEAKLRFLENDVLTAQFMSTYFGNAETGTFTTFPKTPLPEGYDPRKRPW 129

Query: 127 YKQAVAADKPMLTPPYM-AAVGGQIVTIAMPVKKNGELLGVVGGDLSLQTLVKIINSVDF 185
           Y  AV A K +LT PY  A+ GG I+T A+PV  +G+L GV G D SL +LVK+I SVD 
Sbjct: 130 YLDAVKAGKTVLTEPYNDASTGGLIITAAIPVSIDGKLAGVTGSDFSLDSLVKMIKSVDA 189

Query: 186 GGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRIEKVSQDVVLNGQDRILSFTPI 245
           G  G+AFLVS DG++++ P+   V K L D++      I        ++G+ +I SF P+
Sbjct: 190 GTDGYAFLVSKDGKILIHPDPKFVDKPLADLFKVDTPAISSAISQTEIDGKGKITSFIPV 249

Query: 246 SGLPGADWYIGLSIDKDKAYAPLGKFRTSALIA-MLIAVVAIAVLLSLLIQVLLRPLTTM 304
           +GLP  DWY+G  +D D AY+ +G+FR +A IA +L A + I +L ++L + ++RP+T M
Sbjct: 250 AGLPSVDWYLGFVVDSDVAYSAIGQFRLAATIATVLAAAIMIGLLATVLSRFIVRPVTQM 309

Query: 305 GVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVE------RIHASISEVSSATRQV 358
             AM+ +A G  D+         D+ G + +A   F        R+     +  + + Q 
Sbjct: 310 TSAMEGLAAGNLDVGIP-GQERTDQIGSMAAAVAVFRSNAMERLRLEGDAEQNRTLSEQE 368

Query: 359 HDLSQRVMASSNASIIGSDEQSAR-----------------------------TNSVA-- 387
            +  +R  A   A I  + +  A+                              NSVA  
Sbjct: 369 RNERERTAAKDAADIQFAVDSLAKGLAHLSDGDLNYRIDTPFVTRIDRLRNDFNNSVAKL 428

Query: 388 -AAINELGAATQEIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQ- 445
            AA++ +G     I   A +  Q A   + + +     VE+T  A+ E++  +  S  + 
Sbjct: 429 NAALSTVGQNALAIDAGAGEIRQSADDLARRTEQQAASVEETAAALEEITTTVKDSARRA 488

Query: 446 ---------------------------IETLNASTDNIGHILDVIKGISQQTNLLALNAA 478
                                      +E +  S+  I +I+ VI  I+ QTNLLALNA 
Sbjct: 489 EEVGRLVDRARGNAEQSGVIVEDAVRAMEGIEKSSSEISNIIGVIDEIAFQTNLLALNAG 548

Query: 479 IEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQTSSE 538
           +EAARAGEAG+GFAVVA EVR LA R+  +A+ I               T +NAS +  +
Sbjct: 549 VEAARAGEAGKGFAVVAQEVRELAQRSANAAKAIK--------------TLINASTSQVQ 594

Query: 539 ESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVA 598
             VE+   AG+ L ++ + + EI+    ++  ++ EQ+  ++ +N  IN I+   QQ  A
Sbjct: 595 SGVELVGNAGKALETIVREVQEINRHIDAIVTSSREQSTGLQEINTAINTIDQGTQQNAA 654

Query: 599 NLNETLKDCDALSQQANRLKQLVDSFKI 626
            + E       L+ +A  L +L+  F++
Sbjct: 655 MVEEQTAASHGLASEAAALNELLAQFQL 682



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 259 IDKDKAYAPLGKFRTSALIAMLIAVV-AIAV---LLSLLIQVLLRPLTTMGVAMQDIAQG 314
           I +D   A  G  ++S+ I+ +I V+  IA    LL+L   V        G     +AQ 
Sbjct: 508 IVEDAVRAMEGIEKSSSEISNIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQE 567

Query: 315 EGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISEVSSATRQVHDLSQRVMASS---NA 371
             +L +R    +K     + +  N    ++ + +  V +A + +  + + V   +   +A
Sbjct: 568 VRELAQRSANAAK----AIKTLINASTSQVQSGVELVGNAGKALETIVREVQEINRHIDA 623

Query: 372 SIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGASEQADDGRKVVEQTILA 431
            +  S EQS     +  AIN +   TQ+ A    + +  + G + +A    +++ Q  LA
Sbjct: 624 IVTSSREQSTGLQEINTAINTIDQGTQQNAAMVEEQTAASHGLASEAAALNELLAQFQLA 683

Query: 432 MSELSQ 437
            +   Q
Sbjct: 684 AATRRQ 689