Pairwise Alignments

Query, 383 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 371 a.a., Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 88/322 (27%), Positives = 136/322 (42%), Gaps = 33/322 (10%)

Query: 6   TALLSALTTALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKE 65
           TAL     + L+A A +  +  +  + A +  L I  W  YI       A D V  FEKE
Sbjct: 3   TALKKKWLSGLVAGALMVVS--VGTLAAEQKTLHIYNWSDYI-------APDTVANFEKE 53

Query: 66  TGCKVNVKTAATSDEMVSLMAKG--GYDLVTASGDASLRLIVGKRVQPINTALIPNWKNI 123
           TG  V      +++ +   +  G  G+DLV  S     R +     QP++ + +P WKN+
Sbjct: 54  TGINVIYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPGWKNL 113

Query: 124 DPRLKDAPWYVVGQQTYGTPYQWGPNVLMYNTNVFKT-----AP-TSWNVIFDPQNLPDG 177
           DP L            Y  PY W    + YN +  K      AP  SW+++  P+NL   
Sbjct: 114 DPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSWDLVLKPENLE-- 171

Query: 178 KPNKGRVQAYDGPIYIADAALYLKSTKPELGIQNPYELTETQYKAVLELLRAQQPLIHRY 237
           K     V   D P  I    L      P     + Y    T      +LL   +P I RY
Sbjct: 172 KLKSCGVSFLDAPEEIFATVLNYLGKDPNSSKADDYTGPAT------DLLLKLRPNI-RY 224

Query: 238 WHDTTVQMSDFKNEGVVASSAWPYQVNGLQNEKQP------IASTIPKEGATGWADTTML 291
           +H ++  ++D  N     +  W   V    N  +       I+ +IPKEGA  + D   +
Sbjct: 225 FH-SSQYINDLANGDTCVAIGWAGDVWQAANRAKEAKNGVNISFSIPKEGAMAFFDVFAM 283

Query: 292 HTEAKHPNCAYKWMDWSLQPKV 313
             +AK+ + AY+++++ L+P V
Sbjct: 284 PADAKNKDEAYQFLNYLLRPDV 305